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Detailed information on CNT0043994


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana):
NONATHT000809, E-value = 5e-12

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0006508, E-value = 2e-08 (V. vinifera)
CNT0002979, E-value = 2e-08 (G. max)
CNT0030602, E-value = 5e-09 (O. sativa)

Expression of CNT0043994

Peptides detected in this lncRNA

>peptide 1 (105 aa)
IIIIILILIILILILIIIIFIIFIINNNIIIIIIIIIIIINNIIIVIIIIIIIIIIIIIIIIIVITISLNIIVDIVFVDNIIVDVVFVVLIKFVYRFFTS
RSTIG*

>peptide 2 (67 aa)
HHHHHPHPHHPHPHPHHHHLHHLHHQQQHHHHHHHHHHHHQQHHHRYHHHHHHHHHHHHYYYYRHYY*

>peptide 3 (78 aa)
SSSSSSSSSSSSSSSSSSSSSSSSSSTTTSSSSSSSSSSSSTTSSSLSSSSSSSSSSSSLLLLSSLLLASTLLLTSSS*

Sequence

>CNT0043994
TCATCATCATCATCATCCTCATCCTCATCATCCTCATCCTCATCCTCATCATCATCATCTTCATCATCTTCATCATCAACAACAACATCATCATCATCAT
CATCATCATCATCATCATCATCAACAACATCATCATCGTTATCATCATCATCATCATCATCATCATCATCATCATCATTATTATTATTATCGTCATTACT
ATTAGCCTCAACATTATTGTTGACATCGTCTTCGTAGACAACATTATTGTTGACGTCGTCTTCGTAGTCCTTATCAAATTCGTGTACCGCTTCTTCACGA
GTAGAAGCACCATTGGATAAAGAGTCACCATCACCATCATCAGCAGCAACATCACTATTGTTGTCGTCGTCTTCACAATCATCATCAACTTCATATATCG
ATTCTTCTGTAGAGGACTTGTCTTTCCAGTT

lncRNA-RNA interactions

Number of interactions: 22

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
AT5G42280.1 Cysteine/Histidine-rich C1 domain family protein protein coding CNT0043994 1184 431 CDS Cis
AT5G42280.1 Cysteine/Histidine-rich C1 domain family protein protein coding CNT0043994 311 249 CDS Cis
AT5G42280.1 Cysteine/Histidine-rich C1 domain family protein protein coding CNT0043994 304 206 CDS Cis
AT5G42280.1 Cysteine/Histidine-rich C1 domain family protein protein coding CNT0043994 241 206 CDS Cis
AT5G42280.1 Cysteine/Histidine-rich C1 domain family protein protein coding CNT0043994 236 192 CDS Cis
AT5G42280.1 Cysteine/Histidine-rich C1 domain family protein protein coding CNT0043994 286 195 CDS Cis
AT5G42280.1 Cysteine/Histidine-rich C1 domain family protein protein coding CNT0043994 308 189 CDS Cis
AT5G42280.1 Cysteine/Histidine-rich C1 domain family protein protein coding CNT0043994 234 192 CDS Cis
AT5G42280.1 Cysteine/Histidine-rich C1 domain family protein protein coding CNT0043994 291 195 CDS Cis
AT5G42280.1 Cysteine/Histidine-rich C1 domain family protein protein coding CNT0043994 270 187 CDS Cis
AT5G42280.1 Cysteine/Histidine-rich C1 domain family protein protein coding CNT0043994 245 189 CDS Cis
AT5G42280.1 Cysteine/Histidine-rich C1 domain family protein protein coding CNT0043994 265 190 CDS Cis
AT5G42280.1 Cysteine/Histidine-rich C1 domain family protein protein coding CNT0043994 260 190 CDS Cis
AT5G42280.1 Cysteine/Histidine-rich C1 domain family protein protein coding CNT0043994 293 186 CDS Cis
AT5G42280.1 Cysteine/Histidine-rich C1 domain family protein protein coding CNT0043994 307 189 CDS Cis
AT5G42280.1 Cysteine/Histidine-rich C1 domain family protein protein coding CNT0043994 257 185 CDS Cis
AT5G42280.1 Cysteine/Histidine-rich C1 domain family protein protein coding CNT0043994 252 187 CDS Cis
AT5G42280.1 Cysteine/Histidine-rich C1 domain family protein protein coding CNT0043994 195 180 CDS Cis
AT5G42280.1 Cysteine/Histidine-rich C1 domain family protein protein coding CNT0043994 132 134 CDS Cis
AT5G60130.2 AP2/B3-like transcriptional factor family protein protein coding CNT0043994 100 181 CDS Trans
AT5G60130.2 AP2/B3-like transcriptional factor family protein protein coding CNT0043994 93 117 CDS Trans
AT5G60130.2 AP2/B3-like transcriptional factor family protein protein coding CNT0043994 90 77 CDS Trans