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Detailed information on CNT0044509


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P51413|RL172_ARATH, E-value = 4e-33

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0000618, E-value = 2e-10 (G. max)

Expression of CNT0044509

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.4760000.76100.158001.180.4260.690.56100.5810.6820.2290.18300000018.1897.5861.339000000endosperm (SRR068956)endosperm (SRR068957)endosperm (SRR068958)endosperm (SRR068959)floral bud (SRR314815)floral bud (SRR314818)non specified (DRR008476)pollen (SRR847501)pollen (SRR847502)root (SRR314814)root (SRR314817)rosette leaf (ERR754068)rosette leaf (ERR754089)seed (ERR588038)seedling (SRR314813)seedling (SRR314816)seedling (SRR346552)seedling (SRR346553)seedling (SRR847503)seedling (SRR847504)seedling (SRR847505)seedling (SRR847506)seedling (SRR944363)seedling (SRR944364)seedling (SRR944365)seedling (SRR944366)seedling (SRR944367)seedling (SRR944368)seedling (SRR944369)seedling (SRR944370)seedling (SRR944371)seeds (ERR588039)siluge without seeds (ERR588040)01234567891011121314151617181920

Peptides detected in this lncRNA

>peptide 1 (47 aa)
TIDSSMSTICPSPLFCCLVHLDVRNEKGIDIQTFDLITKWFTKSFSN*

Sequence

>CNT0044509
ATACGATTGATTCTTCCATGAGCACGATATGTCCTTCTCCTCTGTTTTGCTGCTTGGTTCACTTGGATGTGAGAAATGAAAAGGGCATCGACATCCAAAC
CTTTGACCTGATAACCAAATGGTTTACAAAAAGTTTTAGTAACTAACTAAAATCACCATGGCAACAAAACAAAAAGAGTCGTAAAACCAACCTCAGCATT
GCTCTCAGCATTCTTGAGAAGATCAAGAACGAATTGAGCAGATTTAGCAGGCCAGCGACCTTGTCCGTTCGAATGCCTGTTCTTT