Detailed information on CNT0004738


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0043112, E-value = 8e-07 (A. thaliana)
CNT0033155, E-value = 8e-07 (P. patens)
CNT0017680, E-value = 3e-06 (Z. mays)
CNT0002798, E-value = 3e-06 (G. max)
CNT0021851, E-value = 5e-08 (A. trichopoda)
CNT0031800, E-value = 3e-06 (O. sativa)
CNT0012080, E-value = 3e-06 (S. tuberosum)
CNT0039778, E-value = 2e-07 (S. moellendorffii)

Expression of CNT0004738

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MVFHKRTFKKAKSLSQGRKIHVESYTPSPLTCHNSPTTFSSSLSPSLSLLSSSFSVSCAHLIIKDSEYRVREIGRWGT*

>peptide 2 (42 aa)
MFRPTTSKFTSHGSNSCWLGPILWLAALEMDNALYVTQNIYT*

>peptide 3 (35 aa)
MSQLPHHFLVFFVPLSLFTLLLFLCVLRSSYHQRF*

>peptide 4 (100 aa)
WCFINELLRKQSPCPREGRYTWRAIRHHHSHVTTPPPLSRLLCPPLSLYSPPLSLCLALILSSKILNTGLGRSEDGVRSGNITSCNTGILDHGHCLLPAG
*

>peptide 5 (61 aa)
MGYVVVISLPVILAFLIMGIACYLLGRSSGRSEAARAPQFYGPPAPPVGSQSHLHDKPLAV*

>peptide 6 (29 aa)
MILFLVVKGIRIKSFGSPTPHRNVLVSIT*

>peptide 7 (38 aa)
MYWSALPSSSWWLHDFHFASVIPTCLGVTPEMNCCQQE*

>peptide 8 (40 aa)
MGLPLLQLGPNPISTTSPLRSRFSPLSLSLSLSASLLLYI*

Sequence

>CNT0004738
ATGGTGTTTCATAAACGAACTTTTAAGAAAGCAAAGTCCCTGTCCCAGGGAAGGAAGATACACGTGGAGAGCTATACGCCATCACCACTCACATGTCACA
ACTCCCCCACCACTTTCTCGTCTTCTTTGTCCCCCTCTCTCTCTTTACTCTCCTCCTCTTTCTCTGTGTCTTGCGCTCATCTTATCATCAAAGATTCTGA
ATACAGGGTTAGGGAGATCGGAAGATGGGGTACGTAGTGGTAATATCACTTCCTGTAATACTGGCATTCTTGATCATGGGCATTGCCTGTTACCTGCTGG
GTAGGTCCAGCGGCCGAAGCGAAGCGGCAAGAGCTCCACAGTTCTATGGGCCTCCCGCTCCTCCAGTTGGGTCCCAATCCCATCTCCACGACAAGCCCCT
TGCGGTCTAGATTTTCACCTCTCTCTCTCTCTCTCTCTCTCTCTGCTTCACTGCTTTTGTATATATAGAGAGATGAGTGATCATTTGACAAGTTTTATGG
ACCATGCGTTCGGTTGGTAAGATGACTTGGTCTTTGAGGAGAGTAGGTGGCTTTTGATTCCTTGATACTTCTTGCGTTTTCCCTTCTCCGATCTTTTGGT
AGCTAAAAGTACTGATCATATTTCGTATCCTTGACCTTATCTTTTTGGTTTTTTGTTCCTCAAAACGTGTATAATTTCCAAGTAGAAGTGAGGGTTTTGA
CTGTATGTTCCGCCCAACAACCAGTAAATTCACTTCTCATGGATCTAATAGCTGTTGGCTGGGACCAATTCTATGGCTAGCTGCCCTGGAGATGGATAAT
GCATTGTATGTAACTCAAAACATATACACGTGATGAAAAAATGATTTTATTTCTAGTGGTCAAGGGTATAAGAATCAAAAGCTTCGGCAGCCCCACACCC
CACAGAAATGTACTGGTCAGCATTACCTAGCAGCTCGTGGTGGCTGCATGACTTTCATTTCGCTTCAGTAATCCCTACATGTCTTGGCGTCACCCCAGAG
ATGAACTGTTGCCAGCAGGAATGAGGAATGGAGTTTAGGGATTACTGATAATCAACTTCTGATCTTATAAGGAAATACAATTG