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Detailed information on CNT0004985


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0042889, E-value = 2e-23 (A. thaliana)
CNT0034678, E-value = 3e-16 (P. patens)
CNT0019000, E-value = 4e-09 (Z. mays)
CNT0002061, E-value = 7e-08 (G. max)
CNT0024131, E-value = 1e-15 (A. trichopoda)
CNT0030844, E-value = 3e-19 (O. sativa)
CNT0012080, E-value = 3e-07 (S. tuberosum)
CNT0038582, E-value = 2e-14 (S. moellendorffii)

Expression of CNT0004985

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MHLNLFRMPLGLMMYRLLFSHGHLGFLSPFVFLENSKILGLDPYGFFISPSTISQLSQGCNSQVID*

>peptide 2 (87 aa)
MANPLSLSLSLSLSLSLSLSLSLSFSVFLKVAWNQFQPLVDNENKHRSLDAIDFERSFLFVKLKFLPQQEHSLCSSTLSQLEWVFDF*

>peptide 3 (32 aa)
MLSLVMKAKLLKWKINDHQICMYMGFGSILFL*

>peptide 4 (66 aa)
PPSPHLSSSLSLYKSYVGSRVFLSIHVEGRRSVFITLGFEMCSCFRVLDLEFPHPRVLKREEEKSE*

Sequence

>CNT0004985
CCCCCATCTCCCCATCTCTCCAGCTCTCTATCTCTCTATAAAAGCTATGTGGGCTCTAGGGTTTTCTTATCCATACATGTAGAAGGTAGAAGAAGTGTGT
TTATTACCCTAGGGTTTGAGATGTGTTCTTGTTTTAGGGTTTTAGATTTAGAGTTCCCTCACCCTAGGGTTTTGAAGAGGGAGGAAGAGAAATCAGAGTG
AGATGACTGGCTGTTTTTTGAGGGGAATGTTGGCTGGCTCGAGGCATTCACATAAGAAGAAGATATATAAGTGAAGGTGTCGGACCAGGCTTCATTCCTC
TCAAATATACATGTTCTATCTATATGCATTTGAATCTCTTCCGTATGCCTCTAGGGTTGATGATGTATAGACTGTTGTTCAGTCACGGCCATCTAGGGTT
TTTGTCTCCTTTTGTTTTCCTGGAAAATTCTAAGATTTTAGGTTTAGATCCTTATGGGTTTTTCATTTCCCCATCGACCATCTCCCAACTCTCTCAAGGT
TGCAACTCTCAGGTAATTGATTAATGGCAAACCCTCTTTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTC
TGTCTTTTTGAAGGTTGCATGGAATCAGTTCCAACCACTTGTTGATAATGAAAACAAACACAGATCACTAGATGCCATTGACTTTGAAAGGTCTTTCCTT
TTTGTGAAGTTGAAGTTTCTCCCCCAGCAAGAACACAGCCTTTGCTCATCAACACTTTCCCAATTGGAATGGGTCTTTGATTTCTAGTTATGTTGCTGCA
AACAGAAAGATTTGCTTCTCCAAATGACCAAAATGATCAGTTGCTGAGAAAGATTTATTGAAGAGGACTCTGAAAACCAAAAATCTTGCATCATATTAAT
TGTGGATGTCAGTCAAGTTTCCTAGGCATCTAGGGTTTCTGAACAACATACCTATAAGATCCTAGCCTGTTTTTCTTTTTCTCTCTCTCTCTCTTTTTTT
TTTTGTTATTTACACATTAATTTCTCCATACTCATGTAAACTTCTCTCTATCTTCCATTTCTTTTTTTTCTTTCTGATGTAGTTTTTCTTGAGAATGTTC
AACTAGACAAGCTCTGTACTAGATACATTCATGTCTGATCTTCGAAACCAATAATTTATGCAATAATGCTTTCACTTGTGATGAAAGCAAAGCTCTTGAA
ATGGAAAATAAATGATCATCAGATTTGTATGTATATGGGGTTCGGTTCGATTCTCTTTCTGTGAAAACTAGAGACAAGGAAAGCAGTGATGTACACGCAT
TCACTGTCAACTCATTCAATGACTTTCATCCTCTCACCCTCATCTCAAAACCCTACTGGGTAAACTTCATTGGGGTTTGATATGACATTTGGAACTCCGC
TTGACATTGTAGGCTTGCTCTCCCGTGCGAACTGTTTTAGATATTCAATAATTACTGGAAGATCTTAAGTGATTTTAAGTATGCAGTTTCATATTAG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_05s0029g00560.t01 Putative uncharacterized protein protein coding CNT0004985 97 72 CDS Trans
VIT_05s0029g00560.t01 Putative uncharacterized protein protein coding CNT0004985 87 76 CDS Trans