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Detailed information on CNT0004997


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0042619, E-value = 6e-10 (A. thaliana)
CNT0034528, E-value = 9e-12 (P. patens)
CNT0020809, E-value = 2e-12 (Z. mays)
CNT0023067, E-value = 4e-08 (A. trichopoda)
CNT0031679, E-value = 2e-12 (O. sativa)

Expression of CNT0004997

Peptides detected in this lncRNA

>peptide 1 (46 aa)
TLFGQTMVWKMGKVPPLFKEEKQEYSLSHSHSLMKFKSMSPLSRED*

>peptide 2 (29 aa)
MTVLKDSSDCFLFPLEPMAEDEEEETFLA*

>peptide 3 (50 aa)
MGLDRSFPSYSTYIHFPSFYNNQISTSSSSSSSSSSSSAGFNWDPNSSNT*

>peptide 4 (33 aa)
HSLDKQWFGRWGKYLPSLRKRNKNTLSLTLTLS*

>peptide 5 (29 aa)
MTHLLNFLSPKPKQQSTKKREVILSSEWI*

Sequence

>CNT0004997
CACACTCTTTGGACAAACAATGGTTTGGAAGATGGGGAAAGTACCTCCCCTCTTTAAGGAAGAGAAACAAGAATACTCTCTCTCTCACTCTCACTCTCTC
ATGAAGTTCAAGAGCATGTCTCCACTCTCAAGGGAAGATTAAGCAACAACTTAAGTGAACAAAACAGCAATAATTCTCAAAATAATATGGGACTTGATAG
ATCATTTCCCTCATATTCTACATATATACATTTTCCATCATTTTACAACAATCAGATTTCAACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCA
GCTGGGTTCAATTGGGACCCCAACAGCTCAAATACATGACAGTCCTCAAGGACTCCTCTGACTGCTTTCTCTTTCCGCTTGAACCCATGGCAGAAGATGA
AGAAGAAGAGACCTTCCTGGCCTGAGAAAAAGACCTCGGATTGTTCTTAGCCTGCTGCTGAATCGACCTCATGGAATGGTTCCATCTGCAGAACCCCTGA
TCCTTCAACGCCTCCACTGATCCCACACTTGCTGCCACTATCCAAGCTTTCCCCATATGACTCATCTTCTTAATTTTCTTTCTCCAAAACCCAAACAACA
ATCAACAAAAAAAAGAGAGGTGATTCTGAGTAGTGAATGGATATAGAAGATCTCTCTATAAATCAAGGTAGTTGTGTTGTGATGAAGAAGATGAGGTGAA
GGTGGGTTGGTTATATAGCAAGAGATGGGTTTGGATTTGGTGCCCAAAGTTTGGGAAAAACCAGGAGCTGTGGCCAGCAGTTTTCATGAATCATGG

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_00s0203g00050.t01 Putative uncharacterized protein protein coding CNT0004997 134 65 CDS Trans
VIT_12s0057g00090.t01 Putative uncharacterized protein protein coding CNT0004997 286 226 UTR3 Trans
VIT_12s0057g00100.t01 Putative uncharacterized protein protein coding CNT0004997 383 413 CDS_UTR Trans
VIT_12s0057g00150.t01 Putative uncharacterized protein protein coding CNT0004997 879 502 CDS_UTR Cis
VIT_12s0057g00180.t01 Putative uncharacterized protein protein coding CNT0004997 660 496 CDS_UTR Cis