Detailed information on CNT0005042


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8LPB4|PSKR1_DAUCA, E-value = 8e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0022393, E-value = 4e-06 (A. trichopoda)

Expression of CNT0005042

Peptides detected in this lncRNA

>peptide 1 (32 aa)
EYFNLCTENSSLSNAILFLSFHTTQKRQNDEL*

>peptide 2 (42 aa)
KNISTYVLKTLHCQMLSYFFLSIPPKKGKMMNYSSKKKQKGK*

>peptide 3 (48 aa)
MKLITLWYRCPEMILRNIESTKAFHPHKYPRNLSGELFLRKIHCLYFY*

>peptide 4 (54 aa)
MAGVDTSQNKELEIKKCRVKYLSKKKKKRKKERKKGKCRVKMGHLTVRTDTITG*

>peptide 5 (61 aa)
MQSKILIKKKKKKEKRKKEREMQSKNGTFDCENRHHYWLIETSKFHCSLHANLQSPVHSIQ*

>peptide 6 (58 aa)
MMCSSGKLILVLGFPITPCNLLNHKMRTCNCRRDCNQKGKVPLIQLFPRFRILSSEQLA

>peptide 7 (72 aa)
MQISKALFIPYSNTTSLLNSKERKMETKTINYYLQFLPLLFCLICFCCLLPKVCPIITLPVHSRIPSILSSI*

>peptide 8 (48 aa)
MILNLQLGKFMLFCIYVKQFSSKIFIASQIWKHSHGKITCKIHCKRGQ*

>peptide 9 (42 aa)
MEKLPVKYIVREVNDVQLGKIDLGFRISYNTMQSIESQDENL*

>peptide 10 (67 aa)
MPHNYSTSPLPYPINTIINLILLPVSEFSLCWEVEGGSGDASEFPRFFDKGLPFDPGFSLSKLFGNV*

>peptide 11 (40 aa)
MEVGIYSFNLFLERLIVLKILGTFMYNLCMPLDVIIMEYV*

>peptide 12 (34 aa)
MWPVRLLLERLSNRSLLSSQWRLESILLICFLRD*

Sequence

>CNT0005042
AAGAATATTTCAACTTATGTACTGAAAACTCTTCATTGTCAAATGCTATCCTATTTCTTTCTTTCCATACCACCCAAAAAAGGCAAAATGATGAATTATA
GTAGCAAAAAGAAACAAAAAGGAAAATGACTATGATTCTGTAGTTATGAGGAAATGGAGGCAGGAACGAAAGAAACAGAGAACACAAGTTAGTGAATGAC
ATTGTTATACTAATGAAACGACAGTGATTTTAGTGTAGTGTAAAAATGTTTGCATTTCTTACTGCTTACAACTAAATGGCAGGTGTTGACACCTCTCAAA
ACAAAGAATTGGAGATTAAGAAATGCAGAGTAAAATACTTATCAAAAAAAAAAAAAAAAAGGAAAAAAGAAAGAAAGAAAGGGAAATGCAGAGTAAAAAT
GGGACATTTGACTGTGAGAACCGACACCATTACTGGTTGATAGAGACAAGCAAGTTTCATTGCTCCCTACATGCAAATCTCCAAAGCCCTGTTCATTCCA
TACAGTAATACCACTTCACTCCTAAACTCCAAAGAAAGAAAAATGGAGACAAAAACAATAAACTACTACCTTCAATTTCTGCCTCTCTTATTCTGCCTTA
TCTGTTTTTGTTGTCTCTTGCCAAAAGTATGCCCCATAATTACTCTACCAGTCCACTCCCGTATCCCATCAATACTATCATCAATTTAATTTTGCTGCCA
GTCTCTGAGTTTTCACTTTGTTGGGAGGTTGAAGGTGGCAGTGGTGATGCCTCAGAATTTCCACGCTTCTTTGACAAAGGGCTTCCATTTGATCCTGGGT
TTTCCTTAAGTAAGTTGTTTGGAAATGTATGAAATTGATTACTTTGTGGTATAGGTGTCCTGAGATGATTCTGAGAAACATTGAATCAACTAAGGCTTTT
CATCCTCACAAGTACCCGAGGAATCTCTCTGGAGAGCTTTTCTTAAGAAAGATCCACTGCCTCTACTTCTATTAAACTATCCAACAATGTTGTGATGTGG
CCTGTAAGACTGTTGCTGGAAAGGTTGAGCAATAGAAGCCTGTTAAGTTCCCAATGGAGGTTGGAATCTATTCTTTTAATTTGTTTCTTGAGAGATTGAT
TGTACTGAAGATATTAGGGACCTTCATGTATAACCTCTGCATGCCTTTGGATGTTATCATCATGGAGTATGTGTAATTGCCAATGATCCTGAACCTTCAG
CTAGGAAAATTCATGCTTTTCTGCATATATGTGAAGCAATTTTCATCCAAAATATTCATAGCATCCCAAATTTGGAAGCATTCTCATGGAAAAATTACCT
GTAAAATACATTGTAAGAGAGGTCAATGATGTGCAGCTCGGGAAAATTGATCTTGGTTTTAGGATTTCCTATAACACCATGCAATCTATTGAATCACAAG
ATGAGAACCTGTAATTGTAGAAGAGATTGCAACCAAAAGGGGAAAGTGCCATTGATCCAATTGTTTCCAAGATTTAGGATCTTGAGCTCTGAACAATTGG
CC

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_03s0017g00510.t01 Putative uncharacterized protein protein coding CNT0005042 94 172 CDS Trans
VIT_12s0057g00860.t01 Putative uncharacterized protein protein coding CNT0005042 311 397 CDS Trans
VIT_16s0013g01700.t01 Putative uncharacterized protein protein coding CNT0005042 211 512 CDS Trans
VIT_16s0013g01730.t01 Putative uncharacterized protein protein coding CNT0005042 323 588 CDS Trans
VIT_18s0089g00660.t01 Putative uncharacterized protein protein coding CNT0005042 91 112 CDS Trans