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Detailed information on CNT0005124


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q7SBD5|RL7_NEUCR, E-value = 4e-25

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0043564, E-value = 3e-10 (A. thaliana)
CNT0035158, E-value = 4e-09 (P. patens)
CNT0020527, E-value = 5e-15 (Z. mays)
CNT0000126, E-value = 1e-15 (G. max)
CNT0022384, E-value = 7e-11 (A. trichopoda)
CNT0030101, E-value = 8e-20 (O. sativa)
CNT0008938, E-value = 3e-07 (S. tuberosum)

Expression of CNT0005124

Peptides detected in this lncRNA

>peptide 1 (41 aa)
EVVGLLKMRSNSHDFMNKIFHANNPKLPQSLSSQKQVSNKI*

>peptide 2 (47 aa)
MQELAILLLKRAPWCSTQFPTPLYPLRRNIYIRYEKKLNAVKHKEWY*

>peptide 3 (72 aa)
MNANGPQFHNLSQKQYGTVSRIVPGHSKLANTATTVTIYYQKRRKNTDNTNFHLPKVFITAAVLRYKHQILR*

>peptide 4 (76 aa)
MQIIPNFPKAYHHKSRLATRYSKQSLKKNQDTGHKNLFHNGVVGQGSSLLVQLSIAPLVNQFSHTLQIGVPKIFAI*

>peptide 5 (29 aa)
MRRNLMLSSTKNGIRFITAIYFSFPDAVV*

Sequence

>CNT0005124
GGAAGTTGTTGGCCTCCTTAAAATGAGGTCCAACAGTCATGATTTCATGAATAAGATCTTCCATGCAAATAATCCCAAACTTCCCCAAAGCCTATCATCA
CAAAAGCAGGTTAGCAACAAGATATAGCAAACAATCCCTCAAAAAAAACCAAGATACAGGACATAAAAACCTGTTCCACAATGGAGTTGTCGGTCAAGGC
AGTTCTCTGCTTGTTCAACTTTCCATAGCCCCTCTTGTAAATCAGTTCTCGCACACTCTTCAAATTGGGGTACCTAAAATATTTGCAATATAAATACATT
AGAAATGAATAATATACAAGTTCAGAACTTTTTATAGGATCTTAAGAAAAACAAAAGAGTAAGATACTTACCCATAAGTCACATAAGGCTCAACCCTGTG
CAACATGTTCATTGTTGCTTTGTTCACTTTAAGAAACACCCCATTGAATATCAGTATTCAAAGAAGCGAATGAGAAGATCTTATGTCATCAAAGAACACT
CCATTTTTTTAATGGGATAGCTTGCTTAGATTAGTAAGCTCATAATAAGAGACATTATATCCTTGTTGATGATGCATAACTAATTCATTTGACATAAAAC
TAATAATGTTCAATCACTAAGGAAGCAGTTTGTAAGATGAACTAATGATTCACCATCCAAAATAGCATCAAGAATACAAGTTTGGGATATTTGATCCTTG
ATACATTTAATTCAGCTTCTTGAGTACTATAGCCAGGCATTGATTTTCAACGTTTCAATCTAGATTATTTGCTCTCACTAGACAATTTATTTTGGTTAAT
GAAAATTGTAGTTTGTCTTCACCATTTGAGTGTCAAGAGTATTTTATGGACATGATATGAATGCTAATGGGCCACAGTTCCATAACCTATCTCAGAAGCA
ATATGGTACAGTATCACGCATAGTACCTGGGCATAGCAAGCTGGCAAATACTGCCACTACTGTCACAATATACTATCAAAAGCGTAGAAAAAATACAGAT
AATACCAATTTCCATCTGCCCAAAGTTTTCATCACAGCCGCAGTGCTAAGGTATAAGCATCAGATTCTGAGGTGAAACAAATATACGTACATACATACAT
ATATATATATATATATATATGTATGTATATATATATATATGTATGTATGTAAATATATATATATGTATGTATATTTGATCTGATACAGTAAGAAAACAAT
TCTGATTAACAATGCAAGAACTGGCAATACTACTCCTAAAAAGGGCACCCTGGTGTTCAACCCAATTCCCTACCCCACTATATCCTTTGAGAAGGAATAT
CTATATAAGATATGAGAAGAAACTTAATGCTGTCAAGCACAAAGAATGGTATTAGATTTATAACGGCCATTTATTTCTCATTTCCAGATGCAGTGGTTTG
ACATCTAACCTGTCTCAAACGCAAGAGCTGCAAAATCTATCTCGTCTTCGAGTGCATAGCATTGATACTGAAAGTTCCAGAGTGAACAGGAATGAGAACC
AGAATATTA

lncRNA-RNA interactions

Number of interactions: 18

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_00s1052g00020.t01 Putative uncharacterized protein protein coding CNT0005124 132 98 CDS Trans
VIT_00s1052g00020.t01 Putative uncharacterized protein protein coding CNT0005124 145 92 CDS Trans
VIT_00s1052g00020.t01 Putative uncharacterized protein protein coding CNT0005124 147 88 CDS Trans
VIT_00s1052g00020.t01 Putative uncharacterized protein protein coding CNT0005124 149 84 CDS Trans
VIT_00s1052g00020.t01 Putative uncharacterized protein protein coding CNT0005124 138 80 CDS Trans
VIT_09s0054g00010.t01 Putative uncharacterized protein protein coding CNT0005124 1651 702 CDS Trans
VIT_09s0054g00010.t01 Putative uncharacterized protein protein coding CNT0005124 840 350 CDS Trans
VIT_09s0054g00030.t01 Putative uncharacterized protein protein coding CNT0005124 1605 704 CDS Trans
VIT_09s0054g00030.t01 Putative uncharacterized protein protein coding CNT0005124 814 330 CDS Trans
VIT_09s0054g00060.t01 Putative uncharacterized protein protein coding CNT0005124 1273 542 CDS_UTR Trans
VIT_09s0054g00060.t01 Putative uncharacterized protein protein coding CNT0005124 852 350 CDS Trans
VIT_09s0054g00070.t01 Putative uncharacterized protein protein coding CNT0005124 323 119 CDS Trans
VIT_09s0054g00090.t01 Putative uncharacterized protein protein coding CNT0005124 1422 523 CDS Cis
VIT_09s0054g00140.t01 Putative uncharacterized protein protein coding CNT0005124 847 350 CDS Trans
VIT_09s0054g00140.t01 Putative uncharacterized protein protein coding CNT0005124 1628 705 CDS Trans
VIT_09s0054g00190.t01 Putative uncharacterized protein protein coding CNT0005124 571 232 CDS_UTR Trans
VIT_09s0054g00210.t01 Putative uncharacterized protein protein coding CNT0005124 897 350 CDS Trans
VIT_09s0054g00210.t01 Putative uncharacterized protein protein coding CNT0005124 1389 537 CDS_UTR Trans