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Detailed information on CNT0005317


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0002598, E-value = 8e-10 (G. max)

Expression of CNT0005317

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MMAPTIRCCMNVTCLNMNTSPHCFYYLQDGRLPSVLLLKSSTQSLKSSS*

>peptide 2 (67 aa)
MQRLRQRGVNKCPMQHPPRVHESFSSSVEFVLFYRLLFGTQELILYCIQSCLETPHINQVAYDGTNN*

Sequence

>CNT0005317
GCGGTTGCTCCAGTGTCCTTTCACTAGCTGGCCTCCAATGACCAATCATAATTCATAACCACCACCATCATCTCACTTCGGGGTTGCTTTTTAGACACTC
CAGGTGAAACGGAATACCCATACCATTGAATTATTACCATCGTCCCTGCTATGTTTCCATATAAGACAGACTGGCGTGATGGACCCTTTGGGCTGTGCAG
TGTGCACAGGTTCTTCCTTCTTTGAGTTGAAGGGGCCATGAGTTGGGGTTAGAGGACGCAGCATGGGGGCTCTACTAGGAAGAATCCTCATCCCAGACTA
GTTTATTATTAGGGTCAAACCTTCTCCAGGGGATCAAAAATAGTCAAAGGGGGGTTCTCTGAGAAAGTTGTGGCCTACGATGAGTGCACTTTAATTTGTA
TGGGTTCCCTCTCTCTTTTCGCCATTAGCTTTTGCTTTTGCCATAATCACACTTGTCTTCCACCACCAGCATGGGTCTGACCAACCCCATATAACAAACT
TCTCAGAAACCTTCTTCCCCACAACACAGTCCCCAGATAAAATTCTGGGTGATGCAGAGATTGAGACAGAGAGGGGTAAACAAGTGCCCCATGCAACATC
CACCACGAGTGCATGAAAGTTTTTCATCCTCTGTTGAGTTTGTTCTATTTTATCGCCTGCTGTTTGGGACACAAGAGTTGATCCTGTACTGTATTCAGAG
CTGCCTGGAGACTCCTCATATAAATCAGGTTGCCTATGATGGCACCAACAATTAGATGCTGCATGAATGTGACCTGCTTAAATATGAATACTAGCCCACA
CTGCTTTTATTACCTCCAAGATGGCCGACTTCCCTCAGTACTACTCCTTAAGTCCTCTACCCAATCTTTGAAATCTTCAAGTTGAAAATCCATTTCAGAA
ATATTGAATCTGAGCATGTCGCTTTCTTTGGTTTGATTGAGAAAATCTTGGAATACCTGAATATATATTTGATTATTGTTAGAGGATATGCAAACTGTAA
ACGGTATATTTCTTTTGAAAACTGGATATTACTACATTACTCAGAGCCCTGGGCATAAAAATG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_01s0026g01910.t01 Putative uncharacterized protein protein coding CNT0005317 1188 431 CDS Cis