Detailed information on CNT0005350


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8W4I4|POT6_ARATH, E-value = 7e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0043554, E-value = 2e-10 (A. thaliana)
CNT0021710, E-value = 4e-09 (A. trichopoda)
CNT0030093, E-value = 9e-07 (O. sativa)
CNT0009344, E-value = 9e-07 (S. tuberosum)

Expression of CNT0005350

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MIKKDTCHKLSSHLRPLISKASSAHIGSVQYMHNII*

>peptide 2 (29 aa)
MIFSIGYLLMEHLLNHFTCYICHASNHGP*

>peptide 3 (44 aa)
MYSNSPWGLIFTNRQLSVVNYILYRQLKDIWMYVKVQPSWKPSE*

>peptide 4 (33 aa)
MSSSLCPPPLSLSLSHTHTHSMHFKYDQERHLP*

>peptide 5 (40 aa)
MTLELILYPITLNMVKSLSPSLVHITSHQYCIFPFNKKKK*

>peptide 6 (41 aa)
MINDFQHWLSPNGAPPEPFYMLYMSCIQPWPLKKGYARIWD*

>peptide 7 (32 aa)
KKTLWCQHSTITRDIRQVVTSITVITAKPVPK*

Sequence

>CNT0005350
CAAAGAAGACACTCTGGTGCCAACACAGTACAATAACTAGAGACATTAGGCAGGTGGTGACTAGCATCACGGTTATAACCGCCAAACCTGTTCCAAAATG
AAGAACAGGCAAAAGGTTAGAAAAATTTTGCAAGGCTGATAATTAGAATACTTGAGTTGCCTTATTTCTAATAATTAGTAATGTACTCTAATTCACCATG
GGGTCTAATTTTCACAAATAGGCAGTTGTCAGTGGTCAATTATATTCTTTATAGGCAATTAAAAGATATATGGATGTATGTGAAGGTGCAACCCAGTTGG
AAGCCATCTGAATAAGTCTGTGTGTGTGGGTGTGTGTTTGCATCCTCCCCTTCCTCCCTCCACTTGGGTGTGGCTGTATGTTTAATAATTTCATACAGCT
CAGTTCTTTATAGGCAATCAGAGTTGTTAGTGATGAATTATAATTCTTTATAGGCACAAACAGAGGATTGGATAAACGTGCTTATTGTGCAATAAGGTGC
AACTCAGTTCTAAGCGATCAGAACAAGTCTTGGTTATTTTGCTCACTTTGTATGTATGTCTTCCTCTCTCTGTCCCCCTCCTCTCTCTCTCTCTCTCTCA
CACACACACACACATTCTATGCACTTCAAATATGATCAAGAAAGACACTTGCCATAAACTATCTTCCCATTTGAGACCTCTTATATCCAAAGCATCTTCT
GCACACATAGGTTCAGTACAATATATGCATAATATAATATGAGAGTTTCAAAGACCAGCCATGAATTGCAGGCTTTCCTACTATACAACTGACCCAAACT
AACTGTAATGTGGATGGATGATACTTATGCATGGGTATGCACAGAGACAGAGTATAGATTAGACATTCTAAAAGGAATGTGTACAGGAGGGTGATGACCC
TTGAACTGATCTTGTATCCTATAACCCTCAACATGGTTAAATCTCTCAGCCCTTCGCTAGTTCATATAACAAGCCACCAATACTGTATTTTTCCTTTCAA
TAAGAAAAAAAAATGATATATCAAGACAGAAACTTAGATGATCAATGATTTTCAGCATTGGCTATCTCCTAATGGAGCACCTCCTGAACCATTTTACATG
TTATATATGTCATGCATCCAACCATGGCCCTTAAAAAAAGGATATGCTCGAATCTGGGATTAAGACACAAGACTATACCAAGCATCAATTCATTTTGAAC
TAAAACCTATGTACTAGTAGCTTGCCCACTGCAAT

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_01s0026g00270.t01 Putative uncharacterized protein protein coding CNT0005350 930 337 CDS Cis