CANTATAdb - search

Detailed information on CNT0005353

BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P51824|ARF1_SOLTU, E-value = 6e-10

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0044865, E-value = 1e-08 (A. thaliana)

Expression of CNT0005353

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MMTRLTMDELHDAVLLVFGKKQDLPNAMNTAKIIDKLGLHSLL*

>peptide 2 (44 aa)
MTCEIPVFVNALKAVVNHTLDAKAFKGWVEVNNPWTNDDETDNG*

>peptide 3 (53 aa)
MGGLGCRGEYYLVIFIFLRFFLPLFFLYFSLRQLACSNAFFLRKLLFRTTNLY*

Sequence

>CNT0005353
CCAGCATTAAATCCTAAATCCATGGTTTTCAATTAAATCATTTGTACTTCTTTTTTTTTTCCCAATCAATAATTTTCTAACGGTTATTTGTCTTTCGTTT
GGAAGGTTTAGATCCATGGTTTCTCTCCAACGAAACGTAGGTGTTTTCCTGAGAACCTAGGGCTTTTACACACATGGCGGTGGTGAAATTAGAGATTGTC
GAGAGAAGTCATAGACGCCGATAGGGTTAGGTCGTCGGTGCTTTCCTCGTTATCCTGCTTGTTATGGCGATGAATCCAGTGATCTCGCTCTTCGGTCGCA
GCAACAATTGTAACTTGCCATTGTGCGAGGGCTAAGTTGTGGTGTGACTGCCCTTTCTGGCTAGATGACTTGCGAGATTCCTGTGTTTGTGAATGCCTTG
AAAGCTGTTGTCAACCATACACTAGATGCCAAAGCTTTCAAAGGCTGGGTAGAAGTAAACAATCCATGGACAAATGATGACGAGACTGACAATGGATGAG
CTCCATGATGCTGTGCTACTTGTATTTGGTAAGAAACAAGATCTCCCTAATGCAATGAATACTGCAAAGATAATTGATAAGCTTGGCCTCCACTCTCTCC
TGTAGCATCACTAGTACATCCAGATTCCAGAGCACCTGTGCAACCTCTAGTGAAGGGCTTTACGGGGGGATTGGATTGGCTCTTCAACAATAATGCTAAC
AAGGCTTGAGGCAATTGAGGAGTCTATTCCTGTGGATGGGTGGTCTTGGATGTAGGGGTGAATATTATCTAGTTATCTTCATTTTTCTTCGATTTTTTCT
TCCCCTTTTCTTTTTATATTTTTCCTTGAGACAGTTGGCTTGTAGTAATGCCTTTTTCTTGAGGAAGCTTTTATTTAGGACAACAAATTTGTACTAGAAG
AATGGTCGGTTGGATATAAATATACTCGACAAGTTTTTATGGGGGTTGTAGATGTTACACTTGTAGCTGGTGTTGAAACTAATTTGATGTACATCCCACT
TTGAAATGGAA