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Detailed information on CNT0005385


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P61210|ARF1_LOCMI, E-value = 3e-13

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0016122, E-value = 1e-17 (S. tuberosum)

Expression of CNT0005385

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (44 aa)
KTLFIGRKEFLNSYLVSNIVGEPIQSLVKPFTRGQAYQLSRQHS*

Sequence

>CNT0005385
AAAACTTTGTTTATAGGACGGAAAGAATTTTTGAATTCATACCTTGTTAGCAATATTGTTGGAGAGCCAATCCAATCCCTCGTAAAGCCCTTCACCAGAG
GCCAAGCTTATCAGTTATCTCGGCAGCATTCATAGCATTAGGGAGATCTTGTTTGTTAGCAAATACAAGCAGCACAGCCTCACGGAGCTCATCCTGAACC
CCGACATCCCACACGGTGAAG

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_01s0127g00440.t01 Putative uncharacterized protein protein coding CNT0005385 280 101 CDS Cis
VIT_01s0127g00920.t01 Putative uncharacterized protein protein coding CNT0005385 202 101 CDS Trans
VIT_01s0127g00920.t01 Putative uncharacterized protein protein coding CNT0005385 197 102 CDS Trans