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Detailed information on CNT0005386


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0002946, E-value = 1e-08 (G. max)

Expression of CNT0005386

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.8241.1280.46603.6292.1692.5062.2722.6213.175grain (SRR866531)grain (SRR866540)grain (SRR866544)seeds (SRR866574)seeds (SRR866575)skin (SRR866568)skin (SRR866569)skin (SRR866570)skin (SRR866571)skin (SRR866572)012340.250.50.751.251.51.752.252.52.753.253.53.75

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MAPCHTYCVERATKRESGILSSLFSCYISQALHE*

>peptide 2 (36 aa)
MHVLEPVVTVLMSAQSYTLYSTIMSFNESKDGINGS*

>peptide 3 (40 aa)
IYFLCYVLLQISLVSPMHFFISFVCFLNSFPSFFLFPPFL*

>peptide 4 (141 aa)
HLFLVLCTPPNISRFSHALFHLICLLSQFLSLFLPFSPLSLILSFVHFYSGKMHSISMHNHHQLPCLHCHPHSYIRTVQHLIERCLLLRMSRDQCIKALA
EHARIWPLVTLTVWRELLKENREFFQAYFHAISPRPCMSKP*

>peptide 5 (53 aa)
FISCVMYSSKYLSFLPCTFSSHLFAFSIPFPLSSFFPPFFNTLFCPFLFWKDA*

Sequence

>CNT0005386
CATTTATTTCTTGTGTTATGTACTCCTCCAAATATCTCTCGTTTCTCCCATGCACTTTTTCATCTCATTTGTTTGCTTTCTCAATTCCTTTCCCTCTTTC
TTCCTTTTTCCCCCCTTTCTTTAATACTCTCTTTTGTCCATTTCTATTCTGGAAAGATGCATAGCATTAGCATGCATAACCATCACCAGCTTCCTTGTTT
GCATTGCCACCCTCATAGCTATATCAGAACTGTTCAGCATCTGATAGAGAGGTGCTTGCTCCTTCGCATGAGCAGAGACCAATGCATAAAGGCACTAGCT
GAGCATGCCAGAATATGGCCCCTTGTCACACTTACTGTGTGGAGAGAGCTACTAAAAGAGAATCGGGAATTCTTTCAAGCCTATTTTCATGCTATATCTC
CCAGGCCTTGCATGAGTAAGCCCTAAACTTGGTACTTAATTAATTAGCCAAGTTACTTTCTTTTGTCCTTGAGAAGGAAAGGCTCGCTCGTTCACATACT
TATGCATGTTTTGGAACCTGTCGTAACTGTGCTCATGTCGGCCCAGTCGTATACATTATATAGCACAATTATGTCATTCAATGAATCCAAAGATGGGATT
AATGGTAGCTGATTTATGAATTGGTATCTTATTTTTCAGGGAGACAATTTTACAAGGCACCGAGGTTTGCAAGAAGGAAACAGTATTGGAAGTAAACCAT
AAGAATCTTACCCTATGTGAAGTACAAATCTATCATGGAACCCAAATATTAGTGACATATAAATTAGCTAGGCCGGCATTGAGACAGTATCATGAAAATT
AGATGTGATAGTTTATGGATCTTGTTCATGTACATTAGCAGCTAGGTATGATAATTTTTCTTCATAATCTTGCTGTTCTGTAATATTCCAGGACATCAAG
AAC