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Detailed information on CNT0005526


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0001229, E-value = 1e-06 (G. max)

Expression of CNT0005526

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MINFQECSSKWFHKTCCQKSFCTIFIFSVFKNRK*

>peptide 2 (34 aa)
MLVCVSFTWIIGRNLFGIKSDLSLLFFIRAQNFI*

>peptide 3 (38 aa)
MILNPGANCLPKQTFKASIPGALTTVRQCEWQIIIKSHL

>peptide 4 (31 aa)
MFFKMVSQNLLSKEFLYHFHFFGFQKPKIDF*

Sequence

>CNT0005526
CTTGCTCAGGACATACACACAATCTCCCACGCTAATTGCCTTGCCCTTCCCTTGAGTAAGAGAATCTTTACATACTAAATTCTGTCCAAAGTAGACCTGC
AAAATCATTCAGCATGTTAGTTTGTGTATCATTCACATGGATAATAGGGCGGAATCTTTTTGGTATTAAGTCTGACCTTTCCCTGCTGTTTTTTATTAGG
GCGCAGAACTTTATCTGACCGGAATTCCTTTAGGGTTACACTTGGCTCAGAGCCTGCAATCCCATTTTCCTGATTGATTGTGGGTACCTGGAAAACATTA
GAAAAAGTTATCACAGACATTGTTAGAACTTTTAATGCAATCAAATTATGTGAACAAACAATTCTAAATGATAATTCTGAAGATTTAGATATGACTAGAA
ACCAATCACGAAAGCTTTTACTAAATGATCAGGACTTCCAATCATTTTTCTTTTATGAATGATATTTGAATAGTAGATTTTCCTGTTGGGCTTGGCTTAC
AAATAAATTTTCTAAATTTTAAAAATAAATAAAACACCCAAAGTGGGAGTACCCTTGGATATCTGTTTAAATGTGAAATTTTGGAGACTTTTAAGAGCTT
ACTTGGTAAAATAGTTTTTTGAGAAACAATTTTATTTTTGGGATCAAAATAACGAAAATGTTTGTTTTTAGACCATTTTTAATTGCTAACGTGCTTATGT
ATTGTACAAATCAAATAAATAAATAAACAGGGGCAAAATTTTAATGTTGTTCAAACAATGATCAATTTTCAGGAATGTTCTTCAAAATGGTTTCACAAAA
CTTGTTGTCAAAAGAGTTTTTGTACCATTTTCATTTTTTCGGTTTTCAAAAACCGAAAATAGATTTTTGATTTTAAAAAAATAAAAATTTCTGGACAGTT
ATCAAGAATCCCACAACTATGATTATTTGGCGTTGATACTTCTCAAAATAAGGAACCTTTGGAGCGTCCTTCAAAACGTGTTCTGCTTTACAAGCATGAA
AAAAAGTACTTCCATATACTAATTAGTGTAACATTAGAAAATATGAGTTCTGAAAGAAGCTGTAAGATACATTGATATTCAGATGAAAGCTTAGCAGATT
GTCGCAAGACAAACACAAAATTCCAGAGGAGATTATTTCTTACCTTACACCGGGAGCATAGCTTGACACCCTGGAATTTGAACCCGTTTATCCTGAGATC
CTTCCATAAGTCTTCAGAAAATGGTTCACAACCATCAACAAGAATGCTGCAACTTTCAAGCGATCAATTTAAAAAATTTGGAAAGCAAGTGGTAAAAAAT
TATTAAATACTAGATGTGATTGAGAATATCTGAATGCTTTTAAATAAAATGAAGTCGATATGGTTACTTGGGTCTAAAACGGTTGATTGGTACAGATTCC
TTGAGAAGCTCGTTTAATGCATCCAATGATCCCTGAAAAATATATTTTCATGAAATCCAAATTAGATATTCTATCCAAAACCAAAGAATATCTAATTTAG
TGTATGTATCCCATGCCCATAACCATACAGTGTCTACTTCATATTTTTATGTAACATAGCCTACATAGGACTTGACTAACCTGAGATATCAGCAGGAATG
GATACTCATCAGAAAACATGATTTTGAATCCAGGAGCAAATTGTTTACCCAAACAAACCTTTAAAGCATCCATTCCAGGGGCTCTCACCACTGTAAGACA
ATGTGAATGGCAGATTATAATAAAATCACATCTGG

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_01s0011g01110.t01 Putative uncharacterized protein protein coding CNT0005526 270 100 CDS Cis
VIT_01s0011g01110.t01 Putative uncharacterized protein protein coding CNT0005526 2012 749 CDS Cis
VIT_01s0011g01110.t01 Putative uncharacterized protein protein coding CNT0005526 1444 537 CDS Cis