Detailed information on CNT0005582


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SM43|VDE_SPIOL, E-value = 4e-82

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0042563, E-value = 7e-06 (A. thaliana)
CNT0033545, E-value = 5e-13 (P. patens)
CNT0032380, E-value = 5e-13 (O. sativa)
CNT0015837, E-value = 7e-09 (S. tuberosum)
CNT0037273, E-value = 2e-06 (C. reinhardtii)

Expression of CNT0005582

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MNPIIYILLTNTSTHLNKDFIGDTCTQTQL*

>peptide 2 (36 aa)
SNLLVNLCCFFSEARWGMSQSSNDEYSKKEMQRNTL*

>peptide 3 (73 aa)
MGQDVHPFHSHNWLMGLGEIRIHYPILVPTQYWVILQLKSHFLSSIYPNSCPKPVLDERKPSIRSGAHLYLLL*

>peptide 4 (30 aa)
MDNVYACQTRIKLWFQEIKDKFISFNSILS*

>peptide 5 (53 aa)
MMESLECHKMLRTNKFGNLMGKSRESILNDLYEWFLNPQKECLFYYQLISCQY*

>peptide 6 (28 aa)
MESSSKMRRKEIPVILVVKILIIVIVEYS

>peptide 7 (168 aa)
MHVKQELNCGFRKSRISSFPLIQFYLSFLSGSARPKSFSTSLASIFSSLKRSISSLLNSFKKYSSSFLSSLNPSINVSKKVFSVFPNSPSISSTSLIIVF
SPSSTVFSSLSTRGGSGPQVLSVLMNLLKSRPTLLAAFSSSGTILSGKVALLVYTTAPPYPSHASFLP*

>peptide 8 (46 aa)
MHHSFPDSIQIRSHLVCSLSWMTKHTCTSNQCDMSKLIYGKTSLKF*

>peptide 9 (33 aa)
MSRKNTSNKSMMAPKLTRNRNGEKQIGSWNNDI*

Sequence

>CNT0005582
CTCCAACTTACTGGTAAATTTATGTTGCTTTTTCTCTGAAGCCAGATGGGGCATGTCACAGAGTAGCAATGATGAGTATAGTAAAAAGGAAATGCAAAGG
AATACATTGTAAAGAACAAAAAACATGAGCATCAGTTCATAGATCATGGGCAACAAATGGTTTAGACCCCTCCAAAATTCACAATTATGAACCACAAATG
GATTTGACAAGCTCAAATTTTATGAACAAATCAATGGATAAAACAAAACACAAATACCAGGAAGAGGGGAACCCTTTCTGAAGAGGAAACTGTAGCTTTT
GCTCTTCCTGAACAATGATCTTCATATAAGAAAGGAATCAACAAGAAAGATTAAACTTTAGATTTCATCTCCGTGAAAGTTATAGTATGGATGGATAACG
TATATGCATGTCAAACAAGAATTAAACTGTGGTTTCAGGAAATCAAGGATAAGTTCATTTCCTTTAATTCAATTTTATCTTAGCTTCCTCAGTGGCAGTG
CTCGTCCAAAGAGCTTTTCTACCTCGCTTGCTTCCATTTTTAGTTCACTCAAAAGATCCATCTCCTCTTTGCTCAATTCCTTTAAGAAGTATTCCTCATC
TTTTCTGAGCTCTTTAAATCCTTCCATCAATGTTTCAAAAAAGGTCTTTTCAGTCTTCCCTAACTCCCCTTCAATTTCTTCAACCTCCCTTATAATTGTC
TTCTCTCCTTCCTCCACAGTCTTTTCAAGTCTCTCAACAAGAGGAGGCTCAGGCCCACAAGTATTGTCTGTTCTAATGAATTTGTTGAAGTCTCGTCCTA
CACTTTTAGCCGCCTTTTCTAGTTCTGGTACAATACTTTCAGGCAAAGTTGCACTTCTTGTGTACACAACAGCACCGCCATATCCATCCCATGCATCATT
CCTTCCCTGATAGTATACAAATACGTAGTCATCTGGTTTGTTCTCTATCTTGGATGACAAAACATACCTGCACAAGTAATCAATGTGACATGTCCAAACT
CATTTATGGAAAAACAAGTCTAAAGTTCTAACGAGTATTTGAACCCAGAGTAATAATAATATAAAATAAAAATAAATACCTCGAAAGGTTTATCAAGGAA
TGAACCCAATAATATATATCCTGCTGACTAACACTTCCACCCACCTTAATAAGGACTTCATTGGTGACACATGTACCCAGACACAACTTTAGGTATTAAC
TATTAGCACAAGTCTTTGGCAATTCTACAATACTCACTACAGAAATAATCCTTTAGATATGAACAGTCACAAATCTAAGTGTTCAAATCTCCTACTTCAG
CAACATGGGACAGGACGTCCATCCTTTCCATAGTCATAACTGGCTTATGGGATTGGGAGAAATCAGAATACACTACCCAATTTTGGTGCCTACACAATAT
TGGGTTATTCTTCAATTGAAATCTCATTTCCTTTCAAGCATATACCCAAATTCATGCCCTAAACCTGTGTTGGATGAGAGAAAGCCATCTATAAGGTCAG
GAGCACATTTGTATCTCCTTTTGTAGCAGTTACATAAAGAATGGAATTAGCAATGTGAATTTTTCTGCTACTAGAAGTAACAAAAATAAAACAGAAATAA
CAAGGATCTAACCATAAGTAATCCATGATGGAAAGTTTAGAGTGCCACAAGATGCTAAGAACAAACAAGTTTGGAAATCTAATGGGCAAATCCAGAGAAA
GCATATTGAATGATCTCTATGAATGGTTCTTGAATCCACAAAAGGAGTGTCTGTTTTACTATCAGTTAATATCTTGTCAATATTGATTCTTCACAAAGTT
CAATGATTAAAGAAAAGTTGCAGAATAGGCCCCAAAGAGCACTACTCTATGCTATCCTACAAAAAGCAAGCACAATTTGACATGCACACAGCATTACAAT
AAAGATCAGACCAATACACTGCAAGAAGCCCACAAACTTGTGCCCTATTAGATCTGAAAAAACTAGCAAGCATGAAAATTGAACAATCAAATCTTGCTTT
GTTTAATTAACAGTTCAACACATAAGATGTCAAGGAAAAACACTTCAAACAAGTCCATGATGGCCCCAAAACTAACAAGAAATAGAAATGGAGAAAAACA
AATTGGAAGTTGGAACAATGACATCTAGCATCATTGCCAAAAAACAACAATGGCCACGGTAAAAAATATTGGATCCATTCTTATGAAGAGACATGAACTC
ATAAATGCAACCCAAATATAATCTGAAAATACCATATCTTTTTACATGACCAACATTATTTCCACCAAAAAGGATTAGAATTAATATATATATATATGTG
TGTGTGTGTGTGTGTGTGTGTGGATGCATAATCACAGAGGAGCATGGAAAGCAGTAGTAAAATGAGAAGGAAGGAGATACCAGTCATCCTGGTAGTGAAG
ATACTCATTATCGTGATTGTAGAGTATTCCAG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_04s0043g01010.t01 Putative uncharacterized protein protein coding CNT0005582 814 302 CDS Cis
VIT_04s0043g01010.t01 Putative uncharacterized protein protein coding CNT0005582 2556 934 CDS_UTR Cis