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Detailed information on CNT0005713


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9FG72|OPT1_ARATH, E-value = 2e-86

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0042889, E-value = 1e-12 (A. thaliana)
CNT0034328, E-value = 3e-16 (P. patens)
CNT0002153, E-value = 7e-08 (G. max)
CNT0024131, E-value = 5e-12 (A. trichopoda)
CNT0031443, E-value = 5e-12 (O. sativa)
CNT0012080, E-value = 3e-16 (S. tuberosum)
CNT0038582, E-value = 7e-11 (S. moellendorffii)

Expression of CNT0005713

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MSLDQVCVYCHCDAHLNPLFFTIFILLFCPYLFCLLRDSLIWLLSIKGLFIYLFLF*

>peptide 2 (37 aa)
MKNILLFLNAWYYLALFEDLFIIYFLIDNFGPIWIDF*

>peptide 3 (35 aa)
MVPRKSTNLAEHLHAHTSIPIPQKMDNLQPQPSVL*

>peptide 4 (57 aa)
MLIGERRLLFISYSCKEKGIVFVELTIQDVDCDLIPKSFRELIKINIFLMTIQKLIE*

>peptide 5 (29 aa)
MLSQSRCLKQSQFQPTEHTLKHFSHKNSN*

>peptide 6 (48 aa)
KERLGGNFRGSQGTTYTSSQTTRKLLSAMVGDPSNGRHRHSDYLPVPP*

>peptide 7 (70 aa)
MFVNGDFFFFFNFSYEVFVFGEKISTTSHLLWDVCLWRKIFSTFLRRCLFLEGKKEEKNIFKKKNIFKRK*

>peptide 8 (45 aa)
MDLEDDLYYYKKCEVFVKFFHFENVRQLASFNSKNTPHNLFIIIN*

>peptide 9 (61 aa)
ARKGWGEISGAHRAQLTPRHRPHGNSSPPWWATLRTAATVTPTTFQCLRKPTLFGYSCCHG*

>peptide 10 (29 aa)
MNPKFLFYNPMFIGIKVFFNTYSINFIFL*

>peptide 11 (104 aa)
QGKAGGKFQGLTGHNLHLVTDHTETPLRHGGRPFERPPPSLRLPSSASVNPPSSGTRVAMDEMISSNPRNVLELYQESQHSMDLFINTEMSISPGMDLEA
TLRH*

>peptide 12 (38 aa)
MIYITIKSVRCLSNFFISKMSDNLPLLIPKIPLIIYLL*

>peptide 13 (85 aa)
MGCLLMEIFFFFSTFPMRCLFLEKKFQLPHICYGMFVYGEKYSQLFLGGVCFWREKKKKRTYLKKKTYLKGSETFTRMSLVVNCC*

>peptide 14 (40 aa)
MGSHLFFTKTLTWKLLSTGFCFELWLAMVSGHSNNHLLVF*

>peptide 15 (31 aa)
MVLGSNLVTGNILNLPSTNCRGMVNTSRFGS*

>peptide 16 (65 aa)
MGWLRSGFYSISLILVFIAPMPLLFVQILSEYIVIYPLIGVSLFLSLSLSLSLSLYIYIYIYIIF*

>peptide 17 (45 aa)
MFPVAFMIMGMWMSLIHFWLGNLRERNHNGTGARKPARKNQFISG*

Sequence

>CNT0005713
GCAAGGAAAGGCTGGGGGGAAATTTCAGGGGCTCACAGGGCACAACTTACACCTCGTCACAGACCACACGGAAACTCCTCTCCGCCATGGTGGGCGACCC
TTCGAACGGCCGCCACCGTCACTCCGACTACCTTCCAGTGCCTCCGTAAACCCACCCTCTTCGGGTACTCGTGTTGCCATGGATGAAATGATTTCTTCAA
ATCCACGGAATGTGCTCGAATTATATCAGGAATCGCAGCATTCCATGGATTTATTTATTAACACAGAAATGAGTATATCTCCTGGGATGGATCTTGAAGC
AACACTTCGACATTGAAGTTAGTTGTCTGTGACCGGAACCGCTTCTACTGCTTCAACAATGATTCTTGTTCTTGTTCTTGCGGGGATTACTGGTTGTTGA
TCCAGTTGATATCTCAATCATTACTGTAAGTTACATTAAATACAGATTAATTTCAAAATAATTTCTGTTGATCCACTTTTTATAAGATTTGTATTCAATG
CAACTAGAATATGATAGGAACACTGTTCATTTCGATATAGTTTTAAGTTGTTATTACTATTTAATTGTTGCAATGTAAAACTAGTGTGTATACTGTTGTT
TATTATTTGGAGCTACTAAGATCAATCTTACTAGCTCGTGTTAAACTTATAGGCTATGTTTGGTTGTCGGAATAGAATATGCTATATTCTTGTATTCTAT
TTCCAATGAGATTTGGTTTCATTGAATATTATATCCAATGGATAATAATATCTTAGGGTGAATACTGGGAAGTGTGGTCCCAATAAGTGACACATGGTCC
TAGGTTCGAATCTTGTCACTGGTAATATCCTGAATTTACCCAGTACTAATTGTCGCGGGATGGTCAACACCTCGAGGTTTGGGTCTTAGTAGAGAGTCTT
AAGAGTTTGGACATCGAAGGTTCCTTCATTATAAAAAAAAAAAGGGAAAAAAAATTATCTTAAGATATTATATCCAATTGAATATATTATATCATGAAAG
TATTTAGTTTGTGAGTGAAAATTGAATGAAAAATATTTTATTGTTTCTCAATGCTTGGTATTATTTAGCGTTATTTGAGGATCTCTTTATAATTTATTTT
CTAATAGATAATTTTGGTCCCATTTGGATTGACTTCTAAGAAGTCAAAAGTTAAGAACTCTTTTTTAAGTTCAATAAGAACTTTTATGCCTCTTTGATTA
ATTTTGTTCAAAGTGGCTAAAAGAGAGTTTAATATGGAAGCTAGGAAAATGTTGCTTCTTGTAAAAGCTTTATTTTAGCTTATGCAAGAAGTCCTTTCAT
ATATAATAAAGTTTTATAATATAAATATTGTTAAAATATTTTATTTTGCATAATAACTAACATGAAAAAGAAAAAGAATTAAGACAACGGAGGAGAGTAG
ATAGAAGAAACGAATTTATAATTCTTATAACATAAGATAATATGTGAGATAACATATCCTGTCTCATTGTTAGCTAAACATAGAATAGAATATATTATTG
CACTTTTTATCCTATTCCACCTAATATCGAATCTTACCAAACATAGTCAAAATCTATTTTCTTATTTCTTTAGCACTCGGCGTTTTTCCTTTCAAATCCA
GCCAGTTGAATTCAAGTTCTTAAAGCAGAGAAATAAGAATATAAAATATTCAGGGTCTTATTCCTACTGGAAATTCACACCATAAATACCATTAAAATGG
TTCCTAGAAAGAGCACAAATTTGGCAGAGCATCTACATGCACACACTTCCATTCCTATTCCTCAAAAGATGGACAACCTTCAGCCACAACCCTCGGTGCT
CTAGGGCATGAAGCCAGTGGGCAATGGTCTTCTGCTTCCAACCCCCACCAGCCCACCCCTAAAATATCTTTAGATTGAAGGGTAAAGAAAATGATGATTC
CCATAAAGGCAACCCCAGCATCCAAAGCTGCTGATAAGATATAGGTGTGCTTGGCCCACCACTGCCTGTACCTGTTGTGAACATAGAAGTTGAAGAAAAC
TCCCACTATTCCCCACATCACAAAGTGCACAGCTCTAGCTGGTGGCATGTTTCCTGTAGCTTTTATGATAATGGGCATGTGGATGAGCCTGATCCATTTT
TGGTTGGGGAACTTGCGTGAAAGGAACCATAATGGAACAGGGGCAAGGAAGCCAGCAAGGAAAAACCAATTCATCTCTGGGTAGACTCCCAACCTCGCAA
ACATTCTGAGTGGACCCACAACTCCCCATATGATTGAAGCACTGTAGAAAACGTTATCACCAGGGCATGTCCATGGACTTCCTTCTGGAAGCAAGGCTGG
ATCGCAGATATACTCCACACTTGTAAGAAGCCACCATGCTGTCCCAAAGTAGATGCTTGAAGCAATCACAGTTCCAACCAACTGAACACACACTAAAACA
TTTTAGCCACAAGAATTCAAATTAAGTCACAAACTGAGATGCTAACACACCTTTTTGTTAGTTTGGATGACATAGAAAATAGGAGAAAAAAATAGGAAGG
AAAATACTAAAGAAAATATTAAAACATTTTCCTTATTTTTCCTCCTAAAAAGTAATGAGGAAAATATTAAAGAAAAACAAGTAAGAAAAGTGAGGAAAAT
TTCATGGGCTCACACTTGTTCTTCACTAAGACTCTGACATGGAAACTCCTTTCCACTGGTTTTTGCTTTGAACTATGGCTTGCCATGGTTAGTGGCCATT
CCAACAACCACCTTCTAGTGTTTTGAAAAACCTACCCTCTTTAGGTACACAAGTTCCCATGGATGAAATACTTTCTTCAAATCTATGAAATGTGCTCGAA
TTGATGTCTTTAGATCAAGTATGTGTTTACTGTCATTGTGATGCACATCTAAACCCTCTCTTCTTTACCATCTTTATTTTGTTATTTTGCCCTTACTTGT
TTTGCCTTTTGAGAGATAGTTTGATTTGGTTGTTGAGCATCAAAGGTTTATTTATTTATTTATTTTTATTTTAATGATTAATTCATTATTTTTTTTGTTC
TTGAGATATGGTTTTCTTGTTGAGCTTAATTTTTTTTAATCATTTTTAATCTTTTATATATCGAAATAGATAATGGGGTGGCTTAGGAGTGGATTTTATT
CCATTTCTCTCATTCTGGTGTTTATTGCACCTATGCCCTTGTTATTTGTGCAAATTTTGTCGGAATATATAGTAATTTATCCTCTAATCGGTGTTTCTCT
CTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATTATTTTTTAATTTTGCATGTCTGTATATTAGTTCATGGAA
ATGTGATAAGAAAGATGATTTGATCTCCTAGTTTACCCACTCATTACAAAGTTGTTTCCTTTTTTTCTCCTTCTCAAATTCTGTGTTCGTTGTTGAAAGT
ACAAGAATAGAATTATTCTATGAATTTATTTAGGGAAAAATGAGTTTTGACTCACTAATATGAAAATATATGAAAAAAAACTCCAAAAATTTTAAATTAG
TATTATCTTCGTTTATTTAAAAATAATTTGAAATACATGTATTTTTTAATGAGTCATATATTATTCCATAAGATGTCCCTTTTACTTGCCATGCCATCAA
CACCAATTGACAACTAGACTCATTCGTGTAAATATTTTCTTTTCTTTTAGATATGTTTATTATTATTATTATCTAGGATTTTTTTTCCTTCTCTCCACCA
ACAAACATTCCATTAATAACTCAAACTCATCTACCTTTTATAAATAACAATATATTACCTTTTAACTGTATCTCTATCTCTTGAGTTGAAGGTGAAGCTA
AAAACAAAGAAAATGCCCCAAACAACCAGAGTAATTGAAATTAACCTCAACTTGCCCTAATGAAAAAAAAAATCCTAAAGAGACCATGAGAAAATAAAAA
TAAAAATAAAAATCATAAATCTTATTTCTAGCAAAACTCAAACTCATCTATAGTCTATTGAGGTTTCACTACTTTGCTATGGGATGTTTGTTAATGGAGA
TTTTTTTTTTTTTTTCAACTTTTCCTATGAGGTGTTTGTTTTTGGAGAAAAAATTTCAACTACCTCACATTTGTTATGGGATGTTTGTTTATGGAGAAAA
ATATTCTCAACTTTTCTTAGGAGGTGTTTGTTTTTGGAGGGAAAAAAAGAAGAAAAGAACATATTTAAAAAAAAAAACATATTTAAAAGGAAGTGAAACA
TTTACGAGGATGAGTCTAGTTGTCAATTGTTGTTAATAATAATAATAATAAAGAATATATTTAAAAAGTAGGGAAACATTTACATGGAAGAGTCTAGTTG
TTAATTGTTGTTAAAGAACATATTTACGACGGAGGAGTCTAGTTATCAATTGTTCCCGTGTAGGAGTCTAGTTATCAATTGTTAATACTCATTAAAAAGT
GCATGTATTTGGAATTATTTTTAAATAGACGAAGATAATAATAATTATATGACTCATTAAAAAATGCATGTATTTGGAATTATTTTTTAAATAGACGAAG
ATAATACTTTAAAAGAATTATTATTTTCATTTATTTTAATATTAGTGAGTTAAAACTCACTTTTTCCCTTTTTATTTATTTATAAAGAATTGAGGAATGG
ATCTTTTGTTTCTTTTTTCTTTTTTTCTTTTTTTTCCTACATATAGGAATTGAAGTATTCTATAGAAATGAGAATATCTCCTAAACTGGATCTAGAAGAT
AATACATATAATCTGTTCTCCTAGGATCTCCTAGGATGGATCTTGAAGATGATCTATATTACTATAAAAAGTGTGAGGTGTTTGTCAAATTTTTTCATTT
CGAAAATGTCCGACAACTTGCCTCTTTTAATTCCAAAAATACCCCTCATAATTTATTTATTATAATCAATTAATATTTAATCTAAGCTACAAAATTTATT
GTATTATTATAACCTATTAATATTAATTGATGTTATTCTCTTTAAAACCCATAATACTAATTGATTCTTGAGGATGACCAAAGCCCCAATTTTTCAATGC
CTACATAACCTTTTTCTATCGTTTTCTTCTCTCCATGGATAACTTCTTCAAACTCTTGGATTTCTATGCAAAATTGCCATTGTAACGTTCTACTTCGCCA
CAAATGGTAGCCAATTCAAGACTGTTTTTGGAGTTATGGTCATGGTTCTAGAAGGTTTGGATCAATGAAAGTGTTATGTTTGGGATTGTAGAGAGTTTCG
GTGAAATGCAATATTTTGGACGAAGCTAAGAATGATAGTGGTGGTGAAAAAAGGTGTTCCTAAAAAAAAAAACTAGCAGTTTGTGCAATGATTTTGGGGG
CCGTGGTTGTATTTTGCATGCATAGGAGAGACACGTTTTGTCATAATTTCTAGTGAAATTATCACTAATCCCTACTTGGAACCTATACTGAACGGAATTT
TTTCTTTGTTAATTTAGTTTGAATGAATAAACTGTTATTGAGTTTCACAAAAGCAATGTGAAGGGTTGGTTTGGAGAGTGGTGATAGTCCATATTCAAAT
ATGCTTTTCTTTTGTATCTTGGGAACTAAGGAATCATAACATGCTTATTGGTGAAAGGAGGTTGTTGTTTATCTCCTATTCATGTAAAGAGAAAGGAATT
GTGTTTGTGGAGTTGACAATCCAAGATGTTGACTGTGATTTGATTCCAAAAAGTTTTAGAGAACTAATTAAGATAAATATTTTTTTAATGACTATACAAA
AATTAATAGAATAATTTCTCACATTTATGGTATTTTTGCGTATCAATTGTTTGTGTTTTAATTTATCGGGGTTGTGTCTCTTGTGTTATTGATCATTTGG
GTTATTAGATTTTAGGGTTTTGGTTTTTATCATTTCATCCTAATTTTTTGCATTTTTGTTGATTGTGTATGTTATTTATTTATTGTTTTAGCATTCAATG
GGTTTTTTGGGAACACAATTAGTTCAATTGTTGTTGCCAATTTAGTGTTGTTGATGATTTTACTTACATGTTTATTAGGGAAAGATTGGAATTCAAGGTG
TTTGGTAAATTTGAGAGGTAATCCAATTTAGTATTCAAGAATATGTTTTTTTATATTTATGAATCCTAAATTTTTATTTTATAATCCAATGTTTATTGGA
ATAAAAGTTTTTTTTAATACTTATTCTATAAATTTTATATTTTTGTAAATACTTTTAATTTGTCTAATTATATTATTTTTTTGACTAGTATTTATAACTT
GAAG

lncRNA-RNA interactions

Number of interactions: 16

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_00s0508g00050.t01 Putative uncharacterized protein protein coding CNT0005713 174 276 CDS Trans
VIT_05s0029g00560.t01 Putative uncharacterized protein protein coding CNT0005713 94 72 UTR3 Trans
VIT_05s0029g00560.t01 Putative uncharacterized protein protein coding CNT0005713 107 67 UTR3 Trans
VIT_05s0029g00560.t01 Putative uncharacterized protein protein coding CNT0005713 126 59 UTR3 Trans
VIT_05s0029g00560.t01 Putative uncharacterized protein protein coding CNT0005713 126 55 UTR3 Trans
VIT_05s0029g00560.t01 Putative uncharacterized protein protein coding CNT0005713 112 53 UTR3 Trans
VIT_05s0029g00560.t01 Putative uncharacterized protein protein coding CNT0005713 98 51 UTR3 Trans
VIT_08s0007g05430.t01 Putative uncharacterized protein protein coding CNT0005713 228 192 CDS Trans
VIT_15s0021g01820.t01 Putative uncharacterized protein protein coding CNT0005713 116 143 CDS Trans
VIT_18s0001g05010.t01 Putative uncharacterized protein protein coding CNT0005713 104 126 CDS Trans
VIT_19s0015g00860.t01 Putative uncharacterized protein protein coding CNT0005713 1540 617 CDS Trans
VIT_19s0015g00860.t01 Putative uncharacterized protein protein coding CNT0005713 1583 671 CDS Trans
VIT_19s0015g00870.t01 Putative uncharacterized protein protein coding CNT0005713 1545 617 CDS Trans
VIT_19s0015g00870.t01 Putative uncharacterized protein protein coding CNT0005713 1588 671 CDS Trans
VIT_19s0015g00880.t01 Putative uncharacterized protein protein coding CNT0005713 3066 1082 CDS_UTR Cis
VIT_19s0015g00880.t01 Putative uncharacterized protein protein coding CNT0005713 1850 627 CDS_UTR Cis