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Detailed information on CNT0005917


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P69317|UBIQ_LUPPO, E-value = 1e-43

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs:
CNT0033674 in P. patens

CNT0009679 in S. tuberosum

Most similar lncRNAs:
CNT0033674, E-value = 1e-24 (P. patens)
CNT0019050, E-value = 1e-12 (Z. mays)
CNT0000474, E-value = 9e-10 (G. max)
CNT0028472, E-value = 2e-44 (O. sativa)
CNT0009679, E-value = 4e-52 (S. tuberosum)
CNT0035799, E-value = 2e-13 (C. reinhardtii)

Expression of CNT0005917

Peptides detected in this lncRNA

>peptide 1 (98 aa)
QFIQRAPQINVTQFKAKTNQKQTGHVYTIRSTPILFNSKETGYGLIRDLKDIVIFKPYTQYPKHVLYLVDSLDSFPNFKSQFPMAETHKTTRHHRRTT*

>peptide 2 (29 aa)
PIHSESSTNQCHPIQSKDKPKANRSRIYY*

>peptide 3 (52 aa)
PNSFRELHKSMSPNSKQRQTKSKQVTYILLEAHQFYLIAKKLVMASLETLKT*

>peptide 4 (53 aa)
MEGGLLLDVVVRQGPPIFQLLPSEDQSLLIRWDPFLVLNLCFHIIDRVGALNL*

Sequence

>CNT0005917
CCCAATTCATTCAGAGAGCTCCACAAATCAATGTCACCCAATTCAAAGCAAAGACAAACCAAAAGCAAACAGGTCACGTATATACTATTAGAAGCACACC
AATTTTATTTAATAGCAAAGAAACTGGTTATGGCCTCATTAGAGACCTTAAAGACATAGTCATCTTCAAACCATATACACAATATCCAAAACACGTTCTT
TATTTAGTAGATAGTTTAGATAGTTTTCCAAACTTCAAAAGCCAATTTCCCATGGCTGAGACCCACAAAACCACCAGACACCACAGACGAACCACATAGG
TAGGGCCAACTGACCATTGAAATACTTAAAAGCCACCACGGAGGCGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCT
CCCATCTTCCAGCTGCTTCCCAGCGAAGATCAATCTCTGCTGATCCGGTGGGATCCCTTCCTTGTCCTGAATCTTTGCTTTCACATTATCGATCGTGTCG
GAGCTCTCAACCTCTAGGGTTATGGTCTTTCCGGTAAGTGTTTTAACAAAGATCTGCATCTGTTTCAATTAAAACACCACAAAGATCAGGAAAAAAATAC
AGATCTATGCAGATCTAAGGTAAAAACCCTTAAAAGTGCCAATATATTGTGACAGATCGGAACAAAGAATTCAAAAAGGCCCAAATCACAAATTCCCTAC
AATTTCTTAGGGCGTCAATAGCCGATCTGGGGAAAAACAAATAGGAAAACCTTCAAAACCGATTTACACCGGAGAAAATTTTCCTTACGAATTCGCAAAA
CCAATCAATAATAGCACCATAAATCTTCACATAAAAAGAAGCTCTTAAAGAAAACAAGAAAACAAACAAACATCAAAAGAAATCCAAATTCTTTCGGAAA
AGGAAGGAGAAATTTTCTCTGAAGTACTCAATGAATTGTAAAAAACAGAAAACACAAAACATAAAAAACGAAACAAAGAAGAACCGAATGGTACCTTGAA
AGAAAGATTCTAAGGCTTCAAAGGATGGCAATGAGAGTTTTCTGGTAGTTTCAAAAGGGTATCAACAATGGAGAGGCTGTGAAGAGAGGGCGTCTATTTG
TAGTCGCAGTTGCCGAGTCGGTGACGAAACCGATTAGGATAAACGAATAGAGTGATGCCACGTGTCCTTTATCCTATCCTCCACGGCATCTAGATGTCTC
GTGGCTCTACTTTAATGACGGAGGGTGCTAGGCGGTGAGGAGAAGTCCCACACGTTTTCATGGCGAG