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Detailed information on CNT0005918


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P69310|UBIQ_AVESA, E-value = 2e-24

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0033674, E-value = 5e-23 (P. patens)
CNT0019050, E-value = 2e-13 (Z. mays)
CNT0000474, E-value = 7e-19 (G. max)
CNT0029868, E-value = 7e-47 (O. sativa)
CNT0009678, E-value = 1e-32 (S. tuberosum)
CNT0035799, E-value = 7e-13 (C. reinhardtii)

Expression of CNT0005918

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MNCKNQNQKASKKKTKHRRRTKRYLQKGKGIFLMA*

>peptide 2 (39 aa)
MPSLSWILALTLSIVSELSTSRVIVFPVRVLTKICICFN*

Sequence

>CNT0005918
TTTATTTATCAATGAAAAAAAAAAAAAACTAATTATGGCCTCACTAACGACCACTTAGACATTAAGGTATACTCAGAATACCCAAAACACATCATTTATA
TAGATATAGTTTTCAAACTTCAAAAGCCTTTCAAATGGCTGAGACCCACAACCCACCAGACCCCCCCACTCAAGAGTAGGTAGAACCAACCGACCACTGG
GATACTTAAAAACCACCACGGAGGCGGAGGACAAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTCCTCCCATCTTCCACTGCTTCCC
GGCGAATATTAGCCTCTGCTGATCCGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCGATCGTGTCCGAGCTCTCAACCTCTAGGGTT
ATCGTCTTTCCGGTAAGAGTTTTGACAAAGATCTGCATCTGTTTCAATTGAAAAACCACAAAGATCAGGAAAAAATTACAGATCTACACAGATCTAAGAG
AGTACCAATTTATTACGACAGATCTGAAAAAAGAATTGAAAAAGGTCCAAAATCCCAAATTCCCTACAAATTCTCAAGTCATCAATAGCCAGATCTAGGA
AAAACGAATAAGAGAACCTTCAAAAGCCGATCTACAACGGAGAAAATTCGCTTCACGATTTCGCAAAAACCAATCAACAATAATACCAGAAATTTTCACA
TAAAAAGCAACCCTTAACAAAAAATTAAGAATATAAACAACATCAAAAGAAATCTAAATTCTTTCGGCAAAGAAAGGAGAAATTTTCTCGACTACTCAAT
GAATTGTAAAAATCAGAACCAGAAAGCATCAAAAAAGAAAACGAAACATAGAAGAAGAACCAAACGGTACCTTCAAAAGGGTAAAGGGATTTTTCTAATG
GCTTGAAT