Detailed information on CNT0005926


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0042553, E-value = 5e-18 (A. thaliana)
CNT0035158, E-value = 2e-11 (P. patens)
CNT0020527, E-value = 5e-21 (Z. mays)
CNT0000126, E-value = 8e-20 (G. max)
CNT0022384, E-value = 2e-17 (A. trichopoda)
CNT0030302, E-value = 8e-20 (O. sativa)
CNT0010786, E-value = 7e-11 (S. tuberosum)

Expression of CNT0005926

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MRIIIPNKVKKEWEEWKAHDHALLISLFLQIWLIFFAPSQKQRGN*

>peptide 2 (51 aa)
MRKYHFLNIFFFPCYSSQTKHNLTMLHTTHQSQDIVDYEICFGYKIKRVFF*

>peptide 3 (37 aa)
MYFNSSDLFFGRYHFDTLAFFSLIYYYIIFFFFHLTI*

>peptide 4 (35 aa)
MVNFLCTITKTKRKLNCNLQYPVSLLAGNSLLSSI*

>peptide 5 (32 aa)
MNCLTACRVDSRTMNCVLLFLLFHVCEQDWKI*

>peptide 6 (28 aa)
MLIIRLQVGSLTLAHHSNQQAMKGNLLKI

>peptide 7 (44 aa)
MHFLDPKVLQSLRIMYIYIYIYIYIYIYIYIYTSTTSSSSFFTY*

Sequence

>CNT0005926
TATAGATTAAATTTGAATATATATATATATATATATCAATTAATTTTAATCATATTTGAACTTTTTTTGCTATTTTCCATATAAAGACAAGCATGAGAAA
ATATCATTTTTTAAATATTTTTTTCTTTCCTTGTTATTCTTCCCAAACCAAACATAACCTTACTATGTTACACACCACACATCAATCCCAAGATATAGTA
GATTATGAGATATGCTTTGGTTACAAGATTAAAAGGGTATTTTTTTGATACCTATTGAAAGGGCACCACTTAATTGTTAGTCTCATTATTTGTATCATGG
TTCCATTTGTTTGTACCTTTACACATGGTCTCATTCATTTGTATTCTTATTTAATGGTTTAAATCTCATCATATGTATTTCAATAGCTCAGATCTCTTTT
TCGGTAGGTACCACTTTGATACCTTAGCATTTTTCTCTTTGATATATTACTATATAATATTTTTTTTCTTTCACTTGACTATCTAATGGTCCTAACTAAA
TGCATTTTCTTGATCCTAAGGTATTGCAATTTCTTTTATTGATCCTACGGTACTACAATTTTTAAGGATTATGAGATATATATATATATATATATATGGT
TCTTTTTATTTGTACCTTTACACCTGGTCCCATTAATTTATGTTCTTATTTAACTGTTTGAAACTCATCATATATATTTCAGTACCTTAGCATTTTCCTC
TATGTATATGTATATTACTATATAATATTTTCTTTCACTTGGCTACTTGATGGTCCTACCTGAATGCACTTTCTTGATCCTAAGGTATTGCAATCTCTAA
GGATTATGTACATATATATATATATATATATATATATATATATATATATATATATATATACAAGTACAACATCTTCTTCTTCATTCTTTACATACTAAAA
TTTGGCATCTAGGGTTTAAATGCTTCTAACATTGTATGTGTAGTCTTTCAGAAATTCTCAATACTCATTACAATTGGGAAAGAGGAGAGAAGAAAGAAAG
GCAACAGGCATGAGAATTATCATTCCCAATAAGGTCAAGAAGGAATGGGAGGAATGGAAAGCCCATGATCATGCCCTACTTATCAGTCTCTTCTTACAGA
TATGGTTAATTTTCTTTGCACCATCACAAAAACAAAGAGGAAACTGAATTGTAACCTTCAGTATCCGGTCAGCTTACTTGCTGGAAACAGCTTATTGTCT
TCTATTTAGTATCTTGTAAAAATGAATTGTCTTACAGCTTGTAGGGTTGATTCAAGAACAATGAATTGCGTACTTCTGTTCCTCTTATTTCATGTTTGTG
AACAGGACTGGAAAATTTAAATTATTCCAAAAGTCAAGAAAAATGAATTTGTTTTTCATAAATGATGGCATTTCTTGAAGATCAAGCATGGATTTGCTCC
TCCCTTCAAGTGCAAGTTAGTGGAGCAGTTTGAAATTTGGATTAGTCCTTTTGATTTTTCACATGCTGATCATAAGATTACAAGTAGGTAGTCTGACATT
AGCACATCATTCTAACCAGCAAGCTATGAAAGGTAATTTGCTGAAAATT

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_00s1052g00020.t01 Putative uncharacterized protein protein coding CNT0005926 102 56 CDS Trans