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Detailed information on CNT0005931


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O48650|SUI1_SALBA, E-value = 2e-37

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0000395, E-value = 1e-34 (G. max)

Expression of CNT0005931

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MSSSDMKLGCWKLIEPDNQSNQTWIIRKKEKSASSTRKMIQVLEFGRLLQGRITDR*

>peptide 2 (60 aa)
MTCSSGCLGTIVTCIPNQTMNLITISNDDTPNCSNIAEYICMINSLYRYARTKFINYTTT*

>peptide 3 (74 aa)
MNIGELRNPRSDKSEKPKDRVRNRVVLEYIKLRWGGITSVRENATRGSTDYICTLLYSRLDDMFIAICKALVWSV

Sequence

>CNT0005931
ACATCACATTACCTGCACAAGAAAGGTTGAAACATTCTTTCGCTGATCACCTTGAAGTTGAATAACCTACAAATGCACAACAGCGTATGTGAATCGAATT
AGGCATATTATGACAGCAGGTAAAATAAAAACAAATGGTTTTCCATAAAAGGAGTTGAAACACACACCTGGCCTAGTTCCGGGTCTTGAACAACAGTACC
ATTGCAGCAGAATTCCTTCTTGAGGTCCTTGAGGATCTTGTTGTAACTAAATTCTTTTCGCAGACCCTGGACAGTTGTCAGGCTTTTCCTTCCGTTCCGT
TGCTGTATGCGGATATGCACATAATCTTTTGACCCAGCACCTGAGTCCTCAGCATTTGCCTCAGCAAACGGATCTAATATTGGAAGAATATAACATAGAC
CATTAATCAGAGTTGCAAAAGAAGTAGACACCAACCAAACTTTAAGAACATAATTGGAAAAATTTGTACACAAGCAAGTTCATCATATTAGCATACCAAA
AGCAGTGGGGATCTGGATGTCGAGTTCAGACATGAAACTTGGCTGTTGGAAATTGATCGAACCTGACAACCAGAGTAATCAGACCTGGATTATAAGAAAA
AAAGAGAAATCAGCATCATCAACAAGAAAAATGATTCAAGTTCTAGAATTTGGTAGACTGCTTCAAGGAAGAATCACAGATCGATGACTTGTTCCAGTGG
GTGTTTGGGTACAATAGTTACTTGTATACCAAATCAAACTATGAATCTCATTACTATCTCAAATGACGATACTCCTAACTGTAGCAACATCGCTGAATAC
ATATGTATGATAAACTCTCTATATCGGTATGCCAGAACCAAATTCATCAATTATACCACCACATAGGTAACGCCTAGAATCAATCTGCTCTAATTCCAAA
CTTAAATTACATCAAAGCACCTCAGCAACATTATAAACAGAACATACTGGCTGGAGAGGAATCATGATGATCTCCAACATAAAACAAATGGGGTAATTAC
AGAAGCTGTATAAGCAAGAAGACCCATTTAAGGACCTTACAAACACAGTGATTTCATTGCGTTCCTCTGATTGAATATCATAAAGCATCAAATGGATATA
ACGGCTTAAACACAGACGAGGCTAAACCAGATAGGAAAATCTAAATTTGCATGCACTTGTTTTCCAAATAAAATTTCAAAATAAATTTAAATTCGAGAAA
AGCCCAATCTCCCCAACCTCGATCAAGATTTGCAAATTTCAAAGAGCTAGGGCTCCAAATAAGATCCAATTGTTTGTACATAAAAGTAGCCCTTCTAATT
TAAAGTCAGATTTAGCAGGCAGAAAAACAAAACAATTTGCGGCTTCAATCGCAACCAATTACAATATTCAAGCTATATTTTTTTCTTCGATTCTTAGCAA
AACTAAAGAAAGCATAATCGTCTATAAACAAAATCAAGGGAACCGGGCACAAAAAGAGCATAGTTATTGAACAAAATTTAACCTTGACTCTTTGAAGATA
AAATTTTTTCACTTTTCCTTCCCGAAAAGGAAATTTCCAACCAATTAATTTCCATCAAAACAATCAGATCCTTAAGGGGGGAAAACACGCAATCCAACCA
CGAAATCACCGGAAACCCAAAATCTACCAAAATTAAGCCCCAATGAAATATTTTTTTTAAAAACCCAAATCATGAATACAAAATATTAAAAATTCCCCGC
AGAGGATGAGATCTTATAAGACAAAAAACTGCAATTCACATCAGAAATACAATTAAGATGATTCAGACAAAAGAAAAGAAAATCACCTGATCCGAGAATA
GGGTTTCAGAAATGAATATCGGTGAGCTAAGAAACCCTAGATCGGATAAGTCCGAGAAACCTAAAGATAGAGTCAGAAATCGAGTAGTTCTCGAATATAT
AAAGTTGAGGTGGGGTGGGATTACGTCGGTTAGGGAAAACGCTACTCGCGGAAGTACGGATTATATATGTACTCTCCTGTATTCACGGTTGGATGATATG
TTTATAGCGATTTGTAAAGCGTTAGTCTGGTCCGTC

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_19s0177g00100.t01 Putative uncharacterized protein protein coding CNT0005931 852 323 CDS Cis
VIT_19s0177g00100.t01 Putative uncharacterized protein protein coding CNT0005931 2250 812 CDS Cis