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Detailed information on CNT0005932


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P69317|UBIQ_LUPPO, E-value = 1e-44

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs:
CNT0035799 in C. reinhardtii

Most similar lncRNAs:
CNT0033674, E-value = 2e-22 (P. patens)
CNT0019050, E-value = 2e-25 (Z. mays)
CNT0000474, E-value = 7e-19 (G. max)
CNT0028472, E-value = 1e-48 (O. sativa)
CNT0009679, E-value = 1e-35 (S. tuberosum)
CNT0035799, E-value = 3e-15 (C. reinhardtii)

Expression of CNT0005932

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MPSLSWILALTLSIVSELSTSRVIVFPVRVLTKICICFN*

>peptide 2 (35 aa)
MNCKNQNQKASKKKTKHRRRTKRYLQKGKGIFLMA*

Sequence

>CNT0005932
ACCACTTTTATTTATCAATGAAAAAAAAAAAAAACTAATTATGGCCTCACTAACGACCACTTAGACATTAAGGTATACTCAGAATACCCAAAACACATCA
TTTATATAGATATAGTTTTCAAACTTCAAAAGCCTTTCAAATGGCTGAGACCCACAACCCACCAGACCCCCCCACTCAAGAGTAGGTAGAACCAACCGAC
CACTGGGATACTTAAAAACCACCACGGAGGCGGAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTTCGACCGTCTTCAAGCT
GCTTCCCGGCGAATATTAGCCTCTGCTGATCCGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTATCGATCGTGTCCGAGCTCTCAACCTC
TAGGGTTATCGTCTTTCCGGTAAGAGTTTTGACAAAGATCTGCATCTGTTTCAATTGAAAAACCACAAAGATCAGGAAAAAATTACAGATCTACACAGAT
CTAAGAGAGTACCAATTTATTACGACAGATCTGAAAAAAGAATTGAAAAAGGTCCAAAATCCCAAATTCCCTACAAATTCTCAAGTCATCAATAGCCAGA
TCTAGGAAAAACGAATAAGAGAACCTTCAAAAGCCGATCTACAACGGAGAAAATTCGCTTCACGATTTCGCAAAAACCAATCAACAATAATACCAGAAAT
TTTCACATAAAAAGCAACCCTTAACAAAAAATTAAGAATATAAACAACATCAAAAGAAATCTAAATTCTTTCGGCAAAGAAAGGAGAAATTTTCTCGACT
ACTCAATGAATTGTAAAAATCAGAACCAGAAAGCATCAAAAAAGAAAACGAAACATAGAAGAAGAACCAAACGGTACCTTCAAAAGGGTAAAGGGATTTT
TCTAATGGCTTGAAT