Detailed information on CNT0006229


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0042615, E-value = 1e-08 (A. thaliana)
CNT0035175, E-value = 7e-10 (P. patens)
CNT0019015, E-value = 2e-10 (Z. mays)
CNT0000589, E-value = 1e-08 (G. max)
CNT0023435, E-value = 4e-11 (A. trichopoda)
CNT0028154, E-value = 7e-10 (O. sativa)
CNT0008755, E-value = 2e-10 (S. tuberosum)
CNT0038248, E-value = 2e-07 (S. moellendorffii)

Expression of CNT0006229

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MTTTETQNNLKSNTNKHLDGSEYYASPRPGCQKF*

>peptide 2 (46 aa)
MIVEYRSGSCSTYTLSHSALTFKIFSKSRYMKHIKYLFFFRSADTT*

>peptide 3 (35 aa)
MIKASSSHNWHTLKRLIPWDPESNKNNSNFPLSPH*

>peptide 4 (33 aa)
MYQTTNCNTINKRKKKNRKTPQESSKTIIQQLG*

>peptide 5 (33 aa)
MIHGDPHTSYPSKFMKGAFHHHQPSSSLIIRYS*

>peptide 6 (35 aa)
LLSLSAFIFGWIISSIGSPEILSESRTILNMPTLS*

>peptide 7 (115 aa)
MTTKSIMACVSIIKLLTNIIAPPFDHSTLSIVIPSHKSLFKAIVLRYSINRCTCINMCTPCTYMCTEPNHIVQIIKDTKKGKCSQLDIWCEEGLTFQEEQ
EMNLKHKPRKSKGNF*

>peptide 8 (32 aa)
MQQLHEAPQFQKFMVFEVKKQPRGQRSSKSEL*

>peptide 9 (49 aa)
MLNHYTHTTINSGFFFSHRNLHVKPIIFLPRFKIPIWWTFCFLLILTTL*

>peptide 10 (72 aa)
MQYRTLKLHWKATESTNTRNSLTTSVIKYSQIKRPDSIENNKLLQYAIPHTATGYRISMHLKRLIKTLNSST*

>peptide 11 (29 aa)
MVSGRDVLNEFILNHPRKLFPKKRKKENP*

>peptide 12 (61 aa)
MSYSLTWFLVEMFSMNSYLIILENYSQKKERKKIPNMFLYNLQFTQSKSHSHVPNHKLQHN*

Sequence

>CNT0006229
CTTGTTGTCATTGTCTGCATTCATCTTTGGCTGGATAATCTCTTCAATAGGCAGCCCTGAAATATTATCCGAGTCCAGGACAATCCTAAACATGCCAACC
TTGTCTTGAACAAACATAACCAAACTAATTTCATCAATTGGCACATAAGTTGCATAAATATGGGGTGCAAATTTTAAAGCCATGTGAGAATTAAAATTAT
TTCCAAAAACATACAGAAGTAACACCAATCAAGTGAAATGATTGTTGAATACCGAAGTGGCTCTTGTAGTACTTATACCTTAAGTCACTCTGCATTAACA
TTTAAAATTTTTTCCAAGAGCAGGTATATGAAACATATTAAATACCTCTTTTTTTTTCGTTCTGCTGATACCACCTAGCTAGAACCCACTAAATCAACTG
CTTCATCAGCTACTAGCTCTCTTCTTAGTTGATGCATATGTAAACCATACCTAATAAATGGTAAAAATCTAAATGAATTCTGCATTTTATTATCATTGAT
CATGTCTATCCCCAACTGCTAGGTTCAAAGGGTTACTTATTCAGATTTACATCCTAGTCAATGTCAAAAGTTGTAAAGCAGTGGAAACTATTCAACTTCC
ATACTGAAAGAAAAAATAATTGATTCAGCAGTCATATCAAAGTTGAGAGTGCATTGTTCCTTTGTCATCGCATTATAAAAGAAAAGTGAGTTTTAAGGTC
AAAGGTTCATATATATATATATATATATATATAATTATATTAATGACAACAAAGAGCATAATGGCTTGTGTTAGCATTATTAAATTGCTTACCAATATTA
TTGCTCCACCTTTTGACCATTCCACTTTATCTATTGTGATACCTTCTCATAAGTCTTTATTCAAAGCCATTGTCCTTAGGTATTCCATAAATAGATGCAC
ATGTATAAATATGTGCACACCATGCACATACATGTGTACTGAACCTAATCATATTGTTCAAATAATAAAAGACACCAAGAAAGGGAAATGTTCACAACTT
GATATATGGTGTGAGGAAGGATTAACTTTTCAGGAAGAACAAGAAATGAATTTGAAACATAAACCAAGGAAAAGTAAAGGTAATTTCTGATGCCTATAGC
CATGTTCTTAGGAAGATTTAAATGTCAACAAAAAGGGAGACATGAAATCAATTTTTTGTTTCTGATTTAAATTATAAATGCAAAACAATAAAAATAAAAA
TGAAATGAAATAAAATAAAAAAGAGAAAAAGAGGATGCCTCCTCCCCTCGCAAACAGTCAGAAACAATGACAACCACAGAGACACAAAATAATCTTAAAA
GCAATACAAATAAGCATTTGGATGGTTCTGAATATTATGCCAGTCCTAGGCCAGGCTGCCAAAAATTTTGAGTAACTAATTGTATATGCTGAGGAAACTG
CACATTTACAACACGAAATCAATTGGAATTTTGTTAAATAAAGACTGAACAAGGTCCAAAAACAGTCTGTGAAAATGGATTATAAGGGGAAAAAGTTAAG
AAAAGAATAAAATAAATAGACAAATAAATGGTCATTTGCAACCAAAAAACTGATATAATCTATTTCCCTCTTTAAAACCAGCCACACGGGCTACTATGAA
TAGATGAACTCAACAATCCTATCAGCTAGCATTACCCGGTACCCAGGAATTTAAGGCACCATCTGCGCAAGATGCTGGCATCAATATGGTACATTTGAAA
CACTTAATCCATCATGCTTAATCATTATACGCACACTACAATCAACTCAGGATTTTTTTTCAGCCATAGAAATTTGCATGTTAAACCCATAATTTTTCTC
CCACGTTTTAAAATTCCCATTTGGTGGACCTTTTGTTTCCTTTTGATTCTCACCACATTATAAATGCAATACACAAATTACTTGCAAGACTACTTAAAAA
ATAACTAATGTTTTTGGCTGGACCCAGTATTTTTTTAAATTTTCTTTTTATTCTTTATGCAATATAGAACTTTAAAGTTACACTGGAAAGCAACTGAATC
CACAAATACAAGGAACTCTCTCACTACTTCAGTCATAAAATATTCACAAATCAAAAGACCAGATTCTATTGAAAACAACAAGCTCCTTCAATATGCTATA
CCACACACAGCAACTGGATACCGGATTTCTATGCATTTGAAAAGGTTGATTAAAACTCTTAACTCTTCCACATAACTCCTGTAAACAATATGAGGAGCTT
ACCTGCCATACTGCCATATCTAAACCTTGAATTTATGATAAATATCCACAAATTTTCTTAGATTTATCAACCTAGGATTAGCTAATCAAAATATGCACTC
ATATATTATATATAAGAGGCAAAAAACAGAACATGACTTCTAAACAAAATTAGCACCAAGTCCATGATTTCCTGATAGCAACCAATTCTAGAATGAGTTA
TTCCCTCACATGGTTTCTGGTAGAGATGTTCTCAATGAATTCATACTTAATCATCCTAGAAAACTATTCCCAAAAAAAAGAAAGAAAGAAAATCCCTAAT
ATGTTCCTGTACAATTTGCAGTTCACACAAAGCAAAAGCCACTCTCATGTACCAAACCACAAATTGCAACACAATTAATAAAAGAAAAAAGAAAAATAGA
AAAACCCCACAAGAATCCAGTAAAACTATCATTCAGCAATTAGGGTAATATTGTAAACTAACACCATTTTCATTCAAGTTTCCGAAGTAACCCATGATAA
GAGCAAGAAGATCATAGAACACTTCGAAAATAATCCATACCCACTGAAGAAAAACATGATTCACGGAGACCCACATACCTCATACCCCTCAAAATTCATG
AAAGGTGCTTTCCATCATCACCAGCCATCCTCTTCCCTTATTATCAGATACAGCTAGTCTACAATCAAAATACGAATCAACCCAAACCAACAGAGGAAAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAAAAACAGAGTAGAGAAAAAGAAGAAAGGTCAGTAACAGTAAGGTCAGTAACAGTGTAAGCCGCCTGC
AAATCTGCAATGATCTCTGATGCAACAGTTACATGAAGCACCACAATTCCAAAAGTTTATGGTGTTTGAGGTGAAGAAGCAGCCACGTGGACAAAGGAGC
AGTAAGTCAGAGTTATAGCTCCATTCCCTCTGATAAAATATAAAAAGCTCCGTCAAACATTGCAGCCTTTTCCAACTTTGGAGTCAAAATCCATAACCAA
ACTCACTCTTCTTCTGTCTTGTCCTCTTAAATTTCTTATTATACAATAAAAAGATATGAGATTGGCATGTCCGTGATCCTTTTTTTCAGAATATATAATC
CTCAAATAATACTACAAAAAACATTATAATCTTTAGAATGAGGTATTAGATATATATGATAAAGGCCTCATCCTCACACAATTGGCACACATTGAAAAGG
CTGATTCCTTGGGACCCTGAGAGCAACAAGAATAACTCCAACTTCCCACTCTCACCTCATTGAAAATAATTTCAAAGCAATCCATCTTTCTGGTTTTACT
TTTGGTCAGTTCAACTATAT

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_05s0020g04860.t01 Putative uncharacterized protein protein coding CNT0006229 916 340 CDS Cis
VIT_05s0020g04860.t01 Putative uncharacterized protein protein coding CNT0006229 936 349 CDS Cis
VIT_11s0065g01050.t01 Putative uncharacterized protein protein coding CNT0006229 308 131 CDS_UTR Trans
VIT_13s0074g00670.t01 Putative uncharacterized protein protein coding CNT0006229 1818 894 CDS Trans
VIT_14s0006g01040.t01 Putative uncharacterized protein protein coding CNT0006229 282 131 CDS_UTR Trans