Detailed information on CNT0006516


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q0ZJ30|RPOC2_VITVI, E-value = 3e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0033199, E-value = 3e-06 (P. patens)
CNT0029013, E-value = 3e-06 (O. sativa)

Expression of CNT0006516

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRHASLISKICLKSLRIAKISHLQFLKFSY*

>peptide 2 (64 aa)
MKITNSCKCSPMLKSHSFFQSFLRQIIIINQQHYILYQTTQIRNDKQRESTIKYQIHRGFILTA*

>peptide 3 (39 aa)
MHVAEYLVCVFEIMVTRKHTKLASFSCNGSEEGCNDLSF*

>peptide 4 (38 aa)
MNAEIQLNGYRLERIWAYPIIRHLGGNVPQFMLQFQKT*

>peptide 5 (31 aa)
MPSLGMMHCYAFVCSAVSMASSSHLSPSVQP*

>peptide 6 (43 aa)
MFKKFENSKNFTPSIFKIFLLSFENKSKNTLLDVSFFLKKKEI*

>peptide 7 (34 aa)
AYQYYRTVLLSPVHDPKPETSNFNKQLTISQPAT*

>peptide 8 (68 aa)
MASFRLNHYIFSQIPNNIQKQYIHNHWYISLHMHLLQTAVSSFPRNQPNIKREIDGTSFANLFSMKKQ*

>peptide 9 (29 aa)
MKNNKEVSYHATQRILVSINSTIIHEFLK*

>peptide 10 (56 aa)
MLVFQEKNLGSCMLQNILCVYLRSWLLESTQNWRASAAMEVKKGAMIYPSSSFYQD*

>peptide 11 (31 aa)
MEIITNNARCCLEIFSFLLFLKTFFFFNFYK*

>peptide 12 (35 aa)
MYPLSQIEYSKPRNWWKKNYIIWPKALHLRIMECF*

>peptide 13 (48 aa)
MPTYLRRPSMASSSFIFLSFFVCVCVCVCYQKQTIHFISTKFISTKEG*

>peptide 14 (62 aa)
MNIGKRESILTRLLTINLLLPNPKHQLPVNLLLLLKALCLKVGIKERRKCKAIRPQKAIADI*

Sequence

>CNT0006516
AGCCTACCAGTACTACAGGACCGTCTTGCTTAGCCCTGTACATGACCCAAAACCTGAAACATCAAATTTCAACAAACAACTTACAATAAGTCAACCAGCC
ACTTGATATCTATATTTACAAATGTTGCATGGCTGGAAGCATTGAAACAAAGTAGAACATTCATCCACTACCGGATAGGAAAGGCCTGGGTTCAACATTC
AAAATCCTCTCATTAAGCCTGAGATCTATCTTAATGTCACAGTTACTCCCCGAAGCAGACCAATCGTTGTCTATAAAACAGTAGTTCTATTGAGTCCATT
CTCATCCTTATGGTTCCCATTTCCTGCCTCAATCACTAAGAGCATGCCAAACTAATTCCAGTATCCCTTCTCCCTCTAATAAACCCAGAGCAGACAAATT
CCATTCTGCAAAACTAGTAGCTGACTTGATTTGACAGCCATTATTGAATAGCCAAGTTCAAAAGAGATCCCCATCTAACATCCTGGACTTGAATGCCGAC
ATACTTAAGGAGACCAAGTATGGCTTCTTCTTCATTTATTTTTCTTTCCTTCTTTGTGTGTGTGTGTGTGTGTGTGTGTTATCAGAAACAAACAATTCAT
TTCATTTCAACAAAATTCATAAGTACAAAAGAAGGATGAAAAACCTTCCACCAAGTATATTACTGCTGTCAAAATCTGATCAAAAGAAGGAAACCGAGCC
TATGATCTCATAGAAGGCAAAACAAACTGCATAGGTAAAGGTGACTACAAAATCAATTCAAAAATTGCTTAAACTCAGGAAGGGTAGAGAAACCCCTAGA
AAGAAACCAATGGCTTCTTTTAGACTAAATCATTACATCTTCTCCCAAATTCCAAACAATATACAGAAGCAATACATTCACAACCATTGGTACATCTCAC
TTCATATGCATTTATTGCAGACTGCAGTTTCCAGTTTTCCAAGAAATCAACCAAACATAAAGAGAGAAATAGATGGCACCTCTTTTGCTAACTTATTTTC
CATGAAAAAACAGTGACCTCTTTACCCCATCATAGACTAACCATCATATTTGCTCTTCTTTCCATCAAGCTGTCCAAGATGTCAGAATTGAGGACCATAT
TCTTTTTTCTTTAGTAAGCCTTTTTCTAAAAAAACTAAATAAATTTAGAACACATTATTTCTACCACTTTGAGGCATGATTTAGGTGGGTAAGAGATTAG
GGTGGCAGTAGGAGGTTCCAAGTCAAATTCCATGTACGAAAAAGGCATTCCCGTAAGAGGCACCATGCTGTTAACATGGAAATCATAACCAACAATGCAA
GGTGTTGTCTGGAAATATTTTCATTTCTACTGTTTCTAAAAACATTTTTTTTTTTCAATTTTTATAAATAGGAAACAAGATTGGCAGTGTTAATTGTTAT
TTTCTATTTAAAATAAAGAAACCAAAAATATTAAAAAATCATTCCATAAAATCATATAGTTCATCATTGATGTTAGTTAAACACCTATCCAAAAAAAAAA
AAAAAATCATTGATATTAGTTAAACAAAACATGTGGGTAGTCGCTTACTAAAACACCAAAAGCACTTTCCAAATGCTCCCAATTAGATTAAATATCAATT
AATGCTGAACCAAGGGAATCATCGATCTCCATCCAGTTTTTAACAACATAAAAATGTATCCACTTAGCCAAATTGAGTACTCCAAGCCAAGAAATTGGTG
GAAAAAAAATTATATAATTTGGCCAAAAGCCCTCCATCTGCGTATCATGGAATGTTTTTAACACCTCCTTGAGGCACCAACTTGAGTGTGCCTATCTGTC
ACCAGATTCGACGACACCACACTGCTTTGTGGCATTTCATCAAACAACTTCCTAGCAATCTAAAAGTCCCCAACGCTAACATGCCCATCAATCATCACAT
TCCACAAAAGCACATTCAAATTTAGCCCAACCTTATCTCTCATTCCATCACAAACATCACCACCTTCAAAAATGGACCACACCCAAAATCAGGTCATGTT
CTAATTGTTCAAGTTGGTTTTGTAGTAATAGGATCGACTAAGCTTTATTTGGCCGCTCTAGGAGCAACTGTTCATGATTTGAGACGGAGATACACTAGTT
ACATCTATATATGAAAAATCAAGATTTGATTATATAACACAGGATTTTCCAAAAGTGGAAAAGTGTTAGATGTGTGTTTGATTGATTCAATATCAATGAA
CATAGGAAAGAGAGAGAGCATCCTAACAAGACTGCTAACAATAAACTTATTGCTACCCAATCCAAAACATCAGCTACCTGTGAATTTGCTTCTCCTGCTC
AAGGCTCTCTGTTTGAAAGTAGGCATTAAAGAAAGAAGAAAATGTAAAGCAATTAGGCCCCAAAAAGCCATTGCAGACATTTGAATTGATCCAAATAAGG
CATCCAATGGTTCATTGCTCTTAGAAAAAGCTTAGATGCTGGTGTTCCAAGAAAAGAATTTAGGTTCATGCATGTTGCAGAATATCTTGTGTGTGTATTT
GAGATCATGGTTACTAGAAAGCACACAAAATTGGCGAGCTTCAGCTGCAATGGAAGTGAAGAAGGGTGCAATGATCTATCCTTCTAGCTCTTTCTATCAA
GACTAATGAGACATGCTTCACTCATTTCTAAAATATGTTTAAAAAGTTTGAGAATAGCAAAAATTTCACACCTTCAATTTTTAAAATTTTCTTATTAAGT
TTTGAAAACAAAAGTAAAAATACATTACTCGATGTTTCTTTTTTTTTGAAAAAAAAAGAAATCTGATTTGAAAACAAAAAAATTAGAAACAAAAGTGTAA
GCAAATGGAAGCAAGATTTTCATTGAAGTAGTTCCAGGGACCAAACTCCTTGTTTCAGGCTCTGGTCAGACCCTCACAAACAATAACTTTGCTTCCAACA
CAAACTTCAAAAAGCCTTCACAAAGATATCTTTGCAAGAAGAAATTCAATTGAATACTTAAAATTGAACAGAATAAAGATCAGAAGAATAACACATGTAT
CCCAATTTGCATTCCCATTAACCCTGAAGTGGAGAAACCAGCTGAGTTTCAAACCATGGCACTAAATAACCTCTGAAAATAGATATGTAAATATCAAGAT
ACTGTAGAAACTTATTTCTTTCATGAAACTAGAGAATGCTGCCCTATTATGCTACTGTTTGATGCCATTGGAAATTGGAAATGAAGAATAATAAGGAAGT
TTCCTATCACGCTACTCAACGTATATTGGTCAGTATAAATTCAACTATAATTCATGAATTTCTAAAATGAATGCAGAAATTCAATTGAATGGTTATAGAT
TAGAAAGAATTTGGGCATATCCTATCATCAGACACCTAGGTGGGAATGTACCGCAATTTATGCTTCAATTCCAAAAAACCTAGATGCTAAAGCACAAACT
TGTATTTCAACCCTCCCAATGAAGATCACAAACTCATGTAAGTGTTCTCCGATGCTAAAATCTCACTCTTTCTTCCAATCATTCCTTAGACAAATAATAA
TCATCAATCAACAACATTACATATTATATCAAACGACACAGATCCGGAATGACAAACAGCGCGAATCAACAATTAAATATCAGATCCACCGCGGCTTTAT
TCTAACCGCGTGATCGAACAATCCAATATACCAAGCAGATGAACCCCAAAAAAAAAAAATTAGGGTTTTGGGAGATTCAAAGAGAATTGAAAAGGATGGT
TACCACATGATGGCGCACAAACCCTTTCCGGTGATAGTATGCCATCGCTTGGGATGATGCATTGTTACGCCTTTGTATGTAGTGCTGTGTCCATGGCCTC
CTCCTCCCATCTCTCCCCGTCAGTCCAACCCTAGCGTTTGCCCCTGAAGAAAATCCTCTTTCGCGAAGTTGTGGCCGATGAGAACAGAGAAATGCTAATA
TGAAAATATATTTTTAATTAATCTACGACCTTTTCCCCACTTAAAATGATGGAATAAAACGACACATTTTCAATAATATTTGG

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_00s0199g00220.t01 Putative uncharacterized protein protein coding CNT0006516 163 102 CDS Trans
VIT_18s0001g00230.t01 Putative uncharacterized protein protein coding CNT0006516 1134 399 CDS_UTR Cis
VIT_18s0001g00230.t01 Putative uncharacterized protein protein coding CNT0006516 850 303 CDS Cis