Detailed information on CNT0006570


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0043164, E-value = 2e-08 (A. thaliana)
CNT0035188, E-value = 3e-07 (P. patens)
CNT0020781, E-value = 8e-08 (Z. mays)
CNT0000254, E-value = 2e-08 (G. max)
CNT0024101, E-value = 8e-08 (A. trichopoda)
CNT0028154, E-value = 8e-08 (O. sativa)
CNT0008755, E-value = 3e-07 (S. tuberosum)
CNT0038248, E-value = 1e-06 (S. moellendorffii)

Expression of CNT0006570

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MTDSWVVFVNAGTSSAVRLSPSASSLPLDHMRGYAPLLLCTPRDP

>peptide 2 (46 aa)
HGHPLLRLRRRRRRLLLLLIRLLRIRTVGGLHLRRSPNPLSLSFSL*

>peptide 3 (40 aa)
MGRFCKRWYLLGRTIKPLSFITTVGSHEGICTATVVHSSRS

>peptide 4 (54 aa)
WPSTAAAAEEAAAAVAAADSPVADQNRWWIASSPLSEPSLTLLLSLKLQNRIEE*

Sequence

>CNT0006570
CATGGCCATCCACTGCTGCGGCTGCGGAGGAGGCGGCGGCGGCTGTTGCTGCTGCTGATTCGCCTGTTGCGGATCAGAACCGTTGGTGGATTGCATCTTC
GCCGCTCTCCGAACCCTCTCTCACTCTCCTTCTCTCTCTAAAATTACAGAACCGGATTGAAGAATAAGGAGTGAAGAGGATAAGAAGACAAAGAAGAAGA
GCCTAGTGAATCTCGAAGTCTATAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAGGCGTGAGGAGGACGGAGGCAGGGTTTGGGGGGTTGAGGGGTGGTG
GAGTCTGCGGTTACGGCTATAGAGAGGATTTGTTTTGGGGAGGATGACGGATTCATGGGTCGTTTTTGTAAACGCTGGTACCTCCTCGGCCGTACGATTA
AGCCCCTCAGCTTCATCACTACCGTTGGATCACATGAGGGGATATGCACCGCTACTGTTGTGCACTCCTCGCGATCCG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_19s0085g00840.t01 Putative uncharacterized protein protein coding CNT0006570 90 81 CDS Trans