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Detailed information on CNT0006891


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LD18|POT4_ARATH, E-value = 1e-35

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0042889, E-value = 6e-18 (A. thaliana)
CNT0034678, E-value = 2e-11 (P. patens)
CNT0019011, E-value = 1e-06 (Z. mays)
CNT0002153, E-value = 9e-08 (G. max)
CNT0024131, E-value = 6e-12 (A. trichopoda)
CNT0030844, E-value = 2e-14 (O. sativa)
CNT0012080, E-value = 9e-08 (S. tuberosum)
CNT0038582, E-value = 4e-10 (S. moellendorffii)

Expression of CNT0006891

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MKGFKSFNLFKTKTISNHFNKTSPNMIDSIPCSTSKTIGTKPSPLPTITKTEFKDKQ*

>peptide 2 (42 aa)
MVKAKRNPPICSMEYGVNRHSKGYNRSLQQEAQTILHLTAWT*

>peptide 3 (44 aa)
MCSYKHKVVKCSGLHIPHQSFGKLILDFWRDSPMKAARTYIKFI*

>peptide 4 (58 aa)
MSYHTFTIIICTQQDENILEQRYQCKGPKDQGKCAKYCFLILMILQLPYKCALINIKW*

Sequence

>CNT0006891
TGCCTACAAAGCAGCGAGTAAAGAGCAAATGTCCCACCTGACATGAGTTAAAATATAATCAGATGCACTAGAGGCTTAATTAACTAGTTTGACTTTAGAA
ACTGTAGTGTCCAATAAACAAAGATCTATGTCATACCATACCTTCACCATTATCATCTGCACTCAACAGGATGAAAACATACTTGAGCAAAGGTACCAAT
GTAAGGGTCCAAAAGATCAAGGAAAATGCGCCAAATATTGCTTCCTCATTTTGATGATTTTGCAACTTCCCTATAAATGTGCTCTTATAAACATAAAGTG
GTGAAGTGCTCAGGTCTCCATATACCACACCAAAGCTTTGGTAAGCTAATACTAGATTTCTGGAGAGATTCACCCATGAAAGCTGCAAGAACATACATCA
AGTTTATTTAAAGCTTAAAGTAGTTAAGTACTTCTAAAATTACAGGTTTAGAGAGTATTACGGATACAGATGATGCTTAGTCCAGTATTATTCTGGAGAG
ATTCACCTTGTTGTCTTTTGTTACTTTTGCAATGATAAATTTTTATTCTGTTGCATCACTCTTCGCTATAAATTTGCCGAATTAATAAAAAACTAAATTT
CCCATTAGATCATTGGGGATAATCTTCAGTACATAAAACATTAGATATACCACATAGGTTTGACAGCACTTGCCATTATTTCAACATATGTAAAAACTAT
ATCATGCAGCCTGCATCAAACCCAATACATGTGAAAATGGAATTGATATTAACTAAAACAAGCTCCAGTTTTGAATTCATATAAATTCACACACTACAAT
GGTCAAAGCCAAAAGAAATCCCCCTATCTGTAGTATGGAATATGGAGTCAATAGGCACTCAAAAGGCTACAACAGAAGCCTGCAACAAGAGGCCCAAACC
ATACTCCATCTGACAGCATGGACATAATCCTAGCATTCTAATAGCATAGATCAACTTCCCAATTTCAACAGACATCAAAGGCCTTGGAAAATAAAATAAA
AATGAGAAACACCAATCCTAACATCAGAACAATAATAATAAAAAATAAATAAATAATACGAGAAAACAACCTGCAACAAGTTGACTAATAGAGTGGAACA
TCAAAATATTAAAAAAAAAAACATCACTCAGAAGTGAGGTAGGATGACCGTTCATCTCGTCAGAAGCCAAAAACCGTACTAACAGAAGTCAATCTCACAA
ACACATCCAATTCTAAATCGCAGTACAGATCGAAAATACTGAAAATGAAGGGATTTAAATCCTTCAACTTATTCAAAACCAAAACAATCAGCAACCACTT
CAATAAAACCTCGCCAAATATGATCGATTCAATTCCTTGTTCAACTTCCAAAACAATCGGAACAAAACCTAGCCCGCTACCTACTATCACCAAAACCGAA
TTCAAAGATAAACAATAACAATCGGAAGAGAAGAACAGCAGAAAACGAATTGAATTGAACTGAATTGAATGACTCAGACATTGATCAAGAGCATCCCGTA
GTTGGATCCATCGAATAAAAGAACAATCCTACACACCGAACTTGATCGATTGCAGTTTAAATTTTTTTTAAAATAAATAAATAAATAAAAATAGAAGCAA
GAATCATCTCAGAAAACCTAACCTGGGAAGGGTTTCGGGAGGAAGTTCCAGATTCCGGCTCCATACTCTCTCCCTTTCTCCGAAGAGAAGTAGAAATTCA
ATTAAATCACACACTCTCTCTCTCGCTCTCTCTCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCGTTCTCTCGGCTACGTCAAGAACAATAA
TAATAGAAGCATCCCATCTTCCCTAGCACAGGAGGAACAGCCTCAATCCAGTTTGTTGTTTATACTAACACCACACGCGGCTCCCACGCGTTCTTTATCC
CACGTGCCCCACACCACCTGGCCTGCTTCGTTTCAACCTTCCAATTATACCTTCT

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_14s0068g00850.t01 Putative uncharacterized protein protein coding CNT0006891 1264 454 CDS_UTR Cis
VIT_14s0068g00850.t01 Putative uncharacterized protein protein coding CNT0006891 1706 632 CDS Cis