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Detailed information on CNT0007004


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 1e-45

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0033455, E-value = 9e-19 (P. patens)
CNT0019050, E-value = 4e-24 (Z. mays)
CNT0000474, E-value = 1e-20 (G. max)
CNT0030022, E-value = 1e-30 (O. sativa)
CNT0007537, E-value = 7e-41 (S. tuberosum)

Expression of CNT0007004

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MTSPSRSKILQPTITYLEYDTFQIFTYKENSNLLVTDMFQRYL*

>peptide 2 (75 aa)
MVSELSTSSVIVLPVRVFTNICIPPRRRRTRQGGHPSRSAEAHLCWKAARGWADLGRLQYSEGIYTSSCSSTPWW*

>peptide 3 (51 aa)
MHKPTPSIERDPTIPQCTRQNKYCSRSPSNQLSLTICNQHHHHGVEEQDEV*

Sequence

>CNT0007004
CTCGCAAATCCCAAAGCCACCTATTCTTCATTCTTCAAGGTTGGTAAAGCCCACTAGTGACCACGGAAGCAAGAGATGAATTTATGAGTTATTAAGGACG
TACATATTCTACTGCTCCTCTCTTCTCCCATCATATTTGGTCTTAGAACGAATAGCCAGCTGTGAGTTCAAAAACTAATGACTTTCTTGATGCAATTGTA
AGTCTGGAGATCTCAGTCTCAAACTGAATAAATAAACACAAGACATTTCCTGCATATTAAACTCCCAACAGCATAACCATGCCCCAACCTTATATCTATA
AATTTATGCTTCATATAAACTTCAACAGAGAACCATGACCAGTCCAAGTAGAAGCAAAATACTGCAACCCACCATTACTTATTTAGAATATGACACATTT
CAAATATTTACTTATAAAGAAAACTCGAATCTGTTAGTAACAGATATGTTCCAAAGATACCTATAAAGCAAACCAAATCCAAATACAAATTATAAAGTAA
ATCCAAGTCCAAATCCACATATTGTTTACCATTGAACATCAATGCATAAACCAACGCCAAGCATTGAAAGGGACCCTACCATTCCACAATGCACAAGACA
GAATAAATACTGCTCCAGATCCCCATCAAACCAGCTATCCCTCACCATCTGCAACCAACATCACCACCACGGAGTCGAAGAACAAGATGAAGTGTAGATT
CCTTCTGAATATTGTAATCTGCCAAGGTCCGCCCATCCTCTAGCTGCTTTCCAGCAAATATGAGCCTCTGCTGATCTGGAGGGATACCCTCCTTGTCTTG
AATCTTTGCCTTCACATTATCTATGGTGTCAGAGCTCTCCACCTCAAGTGTGATAGTTTTACCTGTCAGGGTCTTCACAAATATCTGCATACCTCCACGA
AGGCGAAGAACAAGACAAGGAGGGCATCCCTCCAGATCAGCAGAGGCTCATCTTTGCTGGAAAGCAGCTAGAGGATGGGCGGACCTTGGTAGATTACAAT
ATTCAGAAGGAATCTACACTTCATCTTGTTCTTCGACTCCGTGGTGGTGATGGCGGTTGCAGTTGGTGA

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_14s0036g00930.t01 Putative uncharacterized protein protein coding CNT0007004 1432 505 CDS Cis