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Detailed information on CNT0007009


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9M9L0|APC11_ARATH, E-value = 3e-58

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs:
CNT0040020 in S. moellendorffii

Most similar lncRNAs:
CNT0042380, E-value = 2e-55 (A. thaliana)
CNT0034732, E-value = 1e-07 (P. patens)
CNT0001132, E-value = 7e-68 (G. max)
CNT0022405, E-value = 1e-41 (A. trichopoda)
CNT0010904, E-value = 6e-62 (S. tuberosum)
CNT0040020, E-value = 1e-07 (S. moellendorffii)

Expression of CNT0007009

Peptides detected in this lncRNA

>peptide 1 (44 aa)
HFQSSQNEAQIQSALSRMSKSTPTLNTCCCEFFLSLIPLSAQRG*

>peptide 2 (76 aa)
PLSILAERSPDSERSLSYEQIHSHSQHLLLRVLSFSDPLISSKRMKILFELQILNMWYRFLYLVACCRIMDMGCPR*

>peptide 3 (37 aa)
MLSHHGHGMPKMKPVGFVGWHLMVVVLIVNSLEMIAH*

>peptide 4 (57 aa)
MAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTPQAHCPMCRREWQFKG*

>peptide 5 (30 aa)
MMISDHTLAFYVLAFLNHLLKKETLVWRKE*

>peptide 6 (37 aa)
MAVQRMKYASCMNSWSISLCLRSVLVDIRWATLYLES*

Sequence

>CNT0007009
CCACTTTCAATCCTCGCAGAACGAAGCCCAGATTCAGAGCGCTCTCTCTCGTATGAGCAAATCCACTCCCACTCTCAACACCTGCTGCTGCGAGTTCTTT
CTTTCTCTGATCCCCTTATCAGCTCAAAGAGGATGAAAATCTTATTTGAACTCCAAATACTGAATATGTGGTACAGGTTTTTATATCTGGTGGCATGCTG
TCGCATCATGGACATGGGATGCCCAAGATGAAACCTGTGGGATTTGTAGGATGGCATTTGATGGTTGTTGTCCTGATTGTAAACTCCCTGGAGATGATTG
CCCACTAATTTGGGGTGCTTGCAACCATGCATTCCATCTCCATTGCATCTTGAAATGGGTGAATTCGCAGACTCCTCAAGCGCATTGCCCCATGTGCCGT
AGGGAATGGCAGTTCAAAGGATGAAATATGCAAGTTGTATGAATTCTTGGTCTATATCTCTATGTCTCAGAAGTGTATTAGTTGATATTAGATGGGCAAC
ACTTTACCTGGAAAGTTAGAGGTTTCAGTCATATATTTAGCTTTGTATATGGCACAAAAACCCCCTTTACTAATTTGATTAACTATTATAATCCTTTACC
AGATAATAATGATGATTAGTGATCATACATTGGCATTTTATGTACTTGCTTTTTTGAACCATCTTTTGAAAAAGGAAACACTAGTGTGGAGAAAAGAATA
GGCC