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Detailed information on CNT0007023


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P0C7Q7|PPR38_ARATH, E-value = 9e-160

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0043317, E-value = 2e-12 (A. thaliana)
CNT0000909, E-value = 8e-09 (G. max)
CNT0024020, E-value = 2e-12 (A. trichopoda)
CNT0029963, E-value = 2e-12 (O. sativa)
CNT0011703, E-value = 2e-12 (S. tuberosum)

Expression of CNT0007023

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLRSNLMAALVCPVLHNPFINVAYITTSG*

>peptide 2 (37 aa)
MSSSSSSNQSFRSEITFPRAFISSSLQNTVSFTWILR*

>peptide 3 (52 aa)
MSTTSCAWATIPSLQSASTTVVKLIAFGIILLSTISFNSVLTCFHSPKLQRA*

>peptide 4 (40 aa)
MAERVNEDVESVNIVWNSKRIHFPGKRKHSGVAFHFSDGG*

>peptide 5 (84 aa)
LTSPFLSKLMVCSRKSCLPQVLPTNHLDQKSLSQEHLYHLLYRTQYLSPGFSDEGTCPPACGLPLDTEISFYIGKSVSSIPPPS*

>peptide 6 (135 aa)
MYKSVVSHGVWNQFLSAHFFKEIHGLIHPFNLTITINQGVIAENIRCTALMNHHIKYFNCLIHFRSQTMSIYQCSVGDYIRLHATLKHHVNHIMCLGDHS
FFTECIHHCSQTNCIWHYLAIYHFIQQCINMFPLT*

>peptide 7 (38 aa)
MSSSLWASSRYRNIILHRQISLFHPTTFLRPLFIFELF*

Sequence

>CNT0007023
CTCACATCTCCATTTCTGAGTAAGTTGATGGTGTGCTCAAGAAAATCATGTCTTCCTCAAGTTCTTCCAACCAATCATTTAGATCAGAAATCACTTTCCC
AAGAGCATTTATATCATCTTCTTTACAGAACACAGTATCTTTCACCTGGATTCTCAGATGAGGGAACATGTCCTCCAGCTTGTGGGCTTCCTCTAGATAC
AGAAATATCATTTTACATAGGCAAATCAGTCTCTTCCATCCCACCACCTTCTTGAGACCCCTCTTTATATTTGAGCTCTTTTGAGTCATTTAATGCATCT
CCATTTCTGGAATATTCACCATTAGCCAAGTTTGAGTGTGCCCCACCATTAGAGAAGAGATGAAACTTCTACAATTTCTTCAGACACTCTGAAATGTATA
TCTTTCACTTCAATTGCTGACAATGACCCCTCTTTATAGTTGAGCTCAAACCTAAGAACAAACTTATTCTAAGTAACACCAGTGGTAGTAACTAATGAAT
GATTGCTCATACCATTTCTAAAAGACAATCAGTTTAAGGTCCACTAAATGAAATCCACCTGGAAGGACACCAATGGCAAGTAAACACACGAAAATAACAG
AAATTCAACTCTTGCTTGATAGATCAATCTCTTGTAGCAACATGATTTTTTGATCGATTAAACTTGTTTGCTTGCAAAAACTTGTTGATACAATCAAAAG
CCATTAACTACAAAGAAGAGTGGGACCCTCCAAGAATTCCATGTTTGGAGTTGATGAATATCCTAACTCTTTACTGCACATACTTGCATAGAATTTGTTT
TACAGATTGATCCAATCCATCATCAGATAACATTCCCACTAACAATGTGGTGGTGGACACATCACAAGAAAATCCCCTTGCAAGCATTTCTTCAAGAAGT
TGAATAGCTCTCGATGTCTCATTATTCCTTAAAAATCCTTGGGTAATTGTATTGTAAGTGCAACCATCTGCTGAGCAAGCATTCTCATCCATTTCCATAA
ATAACTTAGTTGCCTCATCTAATAAACCTCTTTTACAAAGCCCATGGGTCATAATATTATAAGTCCAAACGTTAGGCTTTAATCCTTTAGAGGAGAGATT
GGAAAAGAGATCCCTTGCATCTTCAAGTTCACCAGCCCTACACATGCCATCAATGACAATAGTATAAATTTGTATATCAGGATCCAAATTACTACCTTCA
ATAGCTTTCAGCAAAGCCATAGCTTTATCAAGATGACAATTTTTGCATAGATAGTCCAATAAAATGCGGTAAGTGACAAGATCAGGAATTTGGCCACAAG
CTACCATCTCACGAAAAAGTGCTATTGCATCCTGGAGTCTTCCCACATGGCATAAACCATGTATAAGAGTGTTGTAAGTCACGGTGTTTGGAATCAATTT
TTGTCGGCACATTTCTTCAAAGAGATACATGGCCTTATCCATCCTTTCAATCTTACAATAACCATTAATCAAGGTGTTATAGCTGAAAACATTAGGTGCA
CAGCCCTTATGAACCATCATATCAAATACTTTAACTGCCTCATCCATTTCAGATCGCAAACAATGTCCATCTATCAATGCAGTGTAGGTGACTACATCAG
GCTCCACGCCACTTTGAAACATCATGTCAACCACATCATGTGCTTGGGCGACCATTCCTTCTTTACAGAGTGCATCCACCACTGTAGTCAAACTAATTGC
ATTTGGCATTATCTTGCTATCTACCATTTCATTCAACAGTGTATTAACATGTTTCCACTCACCTAAATTACAAAGAGCATAAACTAATGAGTTGCAAGTA
ACAATATTAGGTGAAATGCCTTTAGTGATCATCTCAGAGAAAAGGTTGAAAGCTTGGGTCTGTTGTCTATCCTTACAAAGGCTATGAATGAGGGTGCCAT
AGACAACTACATCAGGCTGACAATTCCCTTTCTCCATGCTCCGAAGTAACCTGATGGCGGCACTAGTGTGCCCCGTTTTGCATAACCCATTTATCAATGT
TGCATATATAACTACATCGGGTTGAAAACCTTCCCAAATCATTTTATCAAACAAGTGGAGGGCTTCGCCAATTTGACCCTCAAGACACAGGCCCTTAATC
AAGGTCGTGAAGGATGCAGTGTCGGGTTGACAACCAAGTTTGAGGATTTTGGCTAAAACGGAGAAAGCGAAATTCACCCGATTCAGATGGCAGAAAGAGT
TAATGAGGACGTTGAGAGTGTAAACATTGTGTGGAATTCCAAAAGAATCCATTTTCCTGGAAAGAGAAAGCACAGTGGAGTAGCGTTTCACTTTAGTGAT
GGAGGTTAAAATTTTTGCGAAATCAACGATGGAGGGAGGAGGATGCATATGAAGCATTCGATTAAATGAAGAGAGGGCATCATCCAGAGTATTGAAATGA
AGGTATTTGGAACGAAATCTATTATGTAATAAAGACAAGAATGGAGAAGGAATAGAAAGCATCCCTGTACCGGGACCAGGAGAAGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAAGCCCTTCGTATCATCTTCATAATCGCCACCATTTTGCAGACAAAAGAGGGTGATAAACGCACAAGACAACGCAGGGAGTATCC
AGAAATAGAG

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_12s0028g02320.t01 Putative uncharacterized protein protein coding CNT0007023 2390 1491 CDS Trans
VIT_14s0030g02260.t01 Putative uncharacterized protein protein coding CNT0007023 2302 1384 CDS Trans
VIT_14s0030g02260.t01 Putative uncharacterized protein protein coding CNT0007023 461 265 CDS Trans
VIT_14s0030g02280.t01 Putative uncharacterized protein protein coding CNT0007023 3155 1656 CDS Trans
VIT_14s0081g00110.t01 Putative uncharacterized protein protein coding CNT0007023 3056 1629 CDS Trans
VIT_14s0081g00280.t01 Putative uncharacterized protein protein coding CNT0007023 3763 1938 CDS Trans