Detailed information on CNT0007073


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0042615, E-value = 3e-11 (A. thaliana)
CNT0035175, E-value = 8e-12 (P. patens)
CNT0020781, E-value = 3e-11 (Z. mays)
CNT0000589, E-value = 8e-12 (G. max)
CNT0023435, E-value = 8e-12 (A. trichopoda)
CNT0032070, E-value = 1e-10 (O. sativa)
CNT0008755, E-value = 2e-09 (S. tuberosum)
CNT0038248, E-value = 5e-10 (S. moellendorffii)

Expression of CNT0007073

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MLLLQSNVLKGKEEWGRKSTVERFLFYSRSLNPNYSKGK*

>peptide 2 (56 aa)
MCSTKQFFSFVGRLADFWGCNPEEKKDKQKLKVKANKKIANKDKRELVHNMITPYM*

>peptide 3 (37 aa)
MAKNFDGCLDLQQGGTLYINGPTAMNQTIVYQWKAMF*

>peptide 4 (40 aa)
MVVLFLSLFIGNRIPSFRSVYNVTKIKAHAFPSSNLRFKQ*

>peptide 5 (29 aa)
MTKKFKKWENLFKEKMYTIFVLSLTVCLW*

>peptide 6 (57 aa)
MREREREKQREGKQITARKGHELLSQATLLMTSLAIIPDLPTKNQRLRHDENINMQK*

>peptide 7 (54 aa)
MEHQLAHIVKELFCSYQKEKREREREREREREYIVLENEGERIVQKQVSNSTIN*

>peptide 8 (41 aa)
MQLSTINRTAYTKFSFTWLKILMVAWIYSKVVHFISMDQLQ*

>peptide 9 (52 aa)
MRVQGSPSPLAKLNALILMIRQPIYPYCPSYHCWGTFLPMCTGSPLLLPPLW*

>peptide 10 (35 aa)
MNKLKQPWLELLCNFWPCCMIIKYTEFRAKKAAYV*

Sequence

>CNT0007073
GTTACCTTTTCGGTTGAGACACCATTTCCAAATGAACTAGGTCATGTAGTGCCAGTAGCATTATCTAGCCAAGCTTGAGTTTTAGAAGAAGAACTGAAAC
ACGAATATGAATGAAGGATGAGAGAGAGAGAGAGAGAGAAGCAAAGAGAAGGGAAGCAAATTACTGCAAGGAAGGGCCATGAATTGCTGTCCCAAGCAAC
CCTGTTGATGACAAGCCTGGCCATAATACCAGATCTTCCAACCAAAAATCAAAGATTAAGACATGATGAGAATATTAATATGCAGAAGTAGATGCAAGAG
CTATGTTCTGCATTCTAAGCAATGACCAAAAAATTTAAGAAATGGGAAAATCTGTTCAAGGAAAAGATGTATACCATTTTTGTACTATCTTTGACAGTAT
GCCTTTGGTAGTATGAAACTGCAGAATCAGATAAACTATTAAATCTTAACAAACCAGAACCCAAAAAATTAAAAAAAGCAAATAAAGACAAAAGAAGAGC
CTCAACAAGGCAATCAATAGCAAATCAAGAAGAGACCTAATGCGGGTGCAGGGCTCTCCCTCGCCTCTGGCAAAGTTGAATGCTTTGATTCTGATGATTC
GCCAACCAATTTACCCTTATTGTCCGTCTTATCACTGTTGGGGAACATTCCTACCAATGTGTACAGGGTCTCCACTGCTTCTTCCTCCTCTTTGGTAATT
GATCCTGAGATGGGTTGTTTCTGAGACCAGTCTGAGCCACCATGCTTCTACAGTAGCAACTCCATTTGTCTAAGTACAAGCGCCCCATTAGTATAACAAA
CATTGAGGTCTGAGGTAGCAGGTAGATACATTATGTAAGCCTATCATATGAGTCAATGGGCTAAGGACTGGGATTTGAGCTAGTAGGGCTAGTTTGAGCT
GATTTTCCTGTTTCTGCATGTTATCTTTTTATTACTAACAATTATAGTTCTTCACCCTTAACTATAAAAGATTGCAGGATATAAACTACCATCAACTTCA
AAAGAGGTAATGCAATTTTGCAAGAAGCTAGGAAGCAAATCAATCATTCTAGAGTGAGGCACTTGTCCAGAATCTCCACAAAAAATGCCTCAGTAATTGT
TTTTCTTTTTCCCTTTTTACCTACTCAGAACAAGAACAAGAAGTAAACTTATTAGCAAATATAGAACTTCACACAATGTGCTCCACTAAACAATTCTTTT
CTTTTGTAGGCAGGTTGGCAGATTTTTGGGGTTGTAATCCAGAAGAAAAAAAAGATAAACAGAAGTTAAAAGTGAAGGCCAATAAGAAGATAGCAAATAA
AGATAAAAGAGAATTAGTTCATAATATGATCACACCTTACATGTAAACTTCACCGGAGTTCACCTTTCTAATCAATATTGAAGAAAATGGTCTATTTTAT
GCAGAAAATTTGCATGGCTGTTAAGGGAACCATTTTTGAAAGAAAATGGAACATCAGTTGGCTCATATTGTGAAGGAGTTGTTTTGTTCTTATCAAAAAG
AAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATATATAGTATTGGAAAATGAAGGGGAAAGAATAGTTCAAAAGCAAGTCAGCAATAGTAC
TATAAATTAGATTTTAGAGAAGTATTTGCAAGCCTAGAAGTTTTTTCATACCATTTGGAACCCGATATAAGAGAAAGCAATCAAAGAAAATAATCATCTC
TAGCTATTTTGGGTCGAAAATGAAAATGTGAGAAGATGAATAAGTTAAAACAACCATGGTTGGAATTACTTTGTAATTTCTGGCCTTGTTGCATGATAAT
TAAATATACAGAATTTAGGGCGAAAAAAGCAGCTTATGTGTGAGTCCAGTTATTAAGAAAAAGTAAGCTCCAGCATGGTAGTGCTCTTTTTGTCTCTTTT
CATTGGAAATAGAATACCAAGTTTTAGGAGTGTCTACAATGTAACAAAAATTAAAGCTCACGCTTTTCCTAGCTCAAATTTAAGGTTTAAGCAGTAGTGT
TCTTTTTCAGTCTCTATATAATTGACTTAAAACTCAAGCTTGAGCTTGGGCATTACCAAAAATTCATGAAGTGAGTTCATTGACCATACCCGAGTTTTAT
GTTATAAATGAACTGAAACAATAAGGTGTAAGGATGCAATTATCCACCATAAATAGAACGGCATATACAAAATTTTCATTTACATGGCTAAAAATTTTGA
TGGTTGCCTGGATTTACAGCAAGGTGGTACACTTTATATCAATGGACCAACTGCAATGAACCAAACTATTGTATATCAATGGAAGGCCATGTTTTAAGTT
GAGACAAATGGTGTATACCTCATAAGGAAGAGTAAACGGGAATAGGAAGCAGGTAAAATAAAATTCAGAAATATATTGTGTTTGAAATCACTATAAAACG
AAACTACCTGTTGTGATAAATCCTGTTGTGATAAATCACTCTATATATTGCCTATATAGGCAAGCTATGCAGGCAGCAGGTTCACACCAAGTGTCAGTGA
GATAACAAATGCTACTTCTGCAAAGCAATGTCCTAAAGGGGAAGGAAGAGTGGGGAAGAAAGAGTACAGTAGAGAGATTCCTTTTTTACTCAAGAAGTCT
TAATCCTAACTACTCAAAAGGCAAATAGTATAATTAAGTTTTAGATTTAAAATCACTGCTTATATATATACTTAATAATGCCTACAGAGAGGG

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_00s0184g00220.t01 Putative uncharacterized protein protein coding CNT0007073 472 219 CDS_UTR Trans
VIT_00s0184g00230.t01 Putative uncharacterized protein protein coding CNT0007073 1014 499 CDS_UTR Trans
VIT_00s1375g00010.t01 Putative uncharacterized protein protein coding CNT0007073 317 226 CDS Trans
VIT_18s0001g14250.t01 Putative uncharacterized protein protein coding CNT0007073 736 382 CDS Trans
VIT_18s0001g14250.t01 Putative uncharacterized protein protein coding CNT0007073 654 340 CDS Trans