Detailed information on CNT0007287


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0000758, E-value = 5e-06 (G. max)

Expression of CNT0007287

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVVTIGFFLTTNQNPTSFPISKMRRTKIRTQ*

>peptide 2 (47 aa)
MTHFTKSIQVFDLMNETKFLINQNGCCSTCKLVLFVLICNCFVFQQP*

>peptide 3 (60 aa)
MAILSRMYPCKECADHFKEVLRNIVKWLFPGNRILDPILVACLCVPTSCYYIQVEPFSEH*

>peptide 4 (47 aa)
MWENCSCSLLLCLKIQLRISVFITIIRWQYYLVCTPARNVQITSKKF*

>peptide 5 (32 aa)
MAEGGGTAWHIEMKFFLFLFVVAIELEAAFVI*

>peptide 6 (51 aa)
MSASTSDKPKKQRTKKQYIPPHISLSVLTFSPPAVNSKTPSVHLPLKTHHF*

>peptide 7 (31 aa)
MMSNKHLNLFLHLAHSQNSEHQPITGAGAGQH

Sequence

>CNT0007287
CATGTCAGCGTCCACATCTGATAAACCAAAAAAACAAAGAACCAAAAAACAATACATCCCTCCTCACATTTCTCTCTCTGTCTTAACTTTCTCTCCACCG
GCAGTGAACTCAAAGACTCCATCTGTTCATCTCCCTCTCAAAACCCACCATTTCTAAAACCCTAACCTCCGTCTAGTCTTCCTCTCAATCTGAAAAACCT
AAATCTCGTGAAGTCTAACCTGTTATTTTCTTATATATCCCCGAAATCTCTAGAATCCCGGGAAACCAACCCTAATCTCTTCTTCGTTAGTCAACAACGT
AGATCGGAGAATGTGGGAAAACTGTAGTTGCTCTCTTCTTCTCTGTCTAAAGATCCAGCTCCGAATCTCTGTCTTCATCACCATCATCAGATGGCAATAT
TATCTCGTATGTACCCCTGCAAGGAATGTGCAGATCACTTCAAAGAAGTTCTAAGGAATATTGTGAAATGGCTATTTCCTGGTAACAGAATTCTTGACCC
CATATTGGTGGCATGTCTTTGTGTTCCTACTTCCTGCTACTATATTCAAGTTGAGCCATTTTCAGAACACTAACAGAAGAAATGGCCGAGGGAGGAGGCA
CTGCATGGCATATTGAAATGAAGTTCTTCCTATTTTTGTTCGTTGTTGCCATAGAATTAGAGGCTGCATTTGTCATTTAGAATGGATTCAATGCAGAATA
AATTGTGTCACTAGCAGAAGTGAGGTTGAAAGGTGTTGGTAACCTTGTTACTTAAATCCTAATATAATCCTATAAATGACGCATTTTACCAAATCAATCC
AGGTTTTTGATTTGATGAATGAAACCAAGTTTCTCATAAACCAGAATGGGTGTTGCTCAACATGCAAGTTGGTTTTGTTTGTGCTAATTTGTAATTGTTT
TGTGTTTCAACAGCCTTAATCAACCAATATTTCCCTGTGAGAGAGTTGATGCAAGGTGGGGCAAGCTGAAATGCAGAAAGGAACTCCAGATTTTGGTGAA
GGATGACATTAACATAATTACCAGAAACCATCAACTGATGTTTTTGTTTGATTTTCAGTGTTACTATTGTAAATAATAACAGTCATTTGAAATTAATTAA
TATAGGAAATCATCTGAATGTCTTGTATAACTCTCTTTGGTATTGCATAAAACAGAATCAGTTTTCCTTAACTATTTCAAGGATAATTTTTTAACAATGG
TTGTGACAATTGGTTTTTTCTTAACAACCAACCAGAACCCAACATCCTTCCCAATTTCCAAAATGAGAAGAACAAAAATAAGGACTCAATAGTAGAACCT
ACAAATCTAATGTGCCATGTTGAAACTTAATTGCATAAGTTGAAGCTTCTGCTTGATTATTTGTGGTTGGAAATGGAGGGGCCTGGCCAAATTTCAGTAT
ATATGTAGTTTCATAAACAGGGTGGAGTTGCAAAATCGCTTGAGCATCCAAATATGCATCGCATGATAAACACCAAACCGATAAATCACTGTTCACAAAG
TCAAAAGAGGAAACTAATGGAGTTGGTGTAGAGCTTCCAGCCGATGATGTCAAACAAGCATTTGAACTTGTTTTTACATTTAGCTCACTCCCAGAACTCT
GAACACCAACCAATAACTGGTGCGGGGGCGGGACAACACC

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_03s0091g00620.t01 Putative uncharacterized protein protein coding CNT0007287 881 410 CDS_UTR Trans
VIT_17s0053g00690.t01 Putative uncharacterized protein protein coding CNT0007287 167 82 CDS Trans