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Detailed information on CNT0007372


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0042889, E-value = 7e-11 (A. thaliana)
CNT0034328, E-value = 4e-15 (P. patens)
CNT0002307, E-value = 2e-08 (G. max)
CNT0024131, E-value = 3e-10 (A. trichopoda)
CNT0031443, E-value = 3e-10 (O. sativa)
CNT0012080, E-value = 7e-17 (S. tuberosum)
CNT0038582, E-value = 1e-09 (S. moellendorffii)

Expression of CNT0007372

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MKVFQRGLLTQREKEAPRLTESGFQFLLMDTNAQLWYIMREYISNSEVFSLSLSLSLSLSLYIYIYIYWSTGKSGLYMYL*

>peptide 2 (36 aa)
MFCHLKISRYFSKNQERNSSDFLNNWILSDFFISLL*

>peptide 3 (32 aa)
GVLPREPMPSNITVRLPSLDDLEAYALGQWEV*

>peptide 4 (31 aa)
MPLDNGRCELHLFVFVLSVQVCLRIVVIFSY*

>peptide 5 (38 aa)
MKLNCFLQLVIICNLMIFWATPFFDLQMCFTSVSCCNL*

Sequence

>CNT0007372
CGGGGTTTTACCAAGGGAACCAATGCCTTCAAATATCACTGTGAGGCTCCCAAGCTTGGATGATCTAGAAGCCTATGCCCTTGGACAATGGGAGGTGTGA
ACTTCATCTATTTGTTTTTGTTCTCTCTGTGCAAGTGTGCTTAAGGATAGTGGTGATATTTTCCTACTGAATCTGGTGCTCGATGTATTATGAAGCTTAA
CTGCTTCCTGCAACTGGTCATTATATGCAATCTCATGATATTTTGGGCTACTCCTTTCTTTGACTTGCAAATGTGTTTCACCAGTGTTTCTTGCTGCAAC
TTATAAGCTCCACTCAAACTGAAAAACTCACGAATTTCAGCTCTTCTTTGATGAAAGTTTTCCAGCGTGGTCTTCTGACTCAAAGAGAAAAAGAAGCTCC
ACGGTTAACTGAGAGTGGTTTCCAGTTCTTGCTTATGGATACAAATGCACAACTTTGGTACATCATGAGGGAATATATCTCTAATTCTGAGGTATTCTCT
CTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATACTGGTCAACTGGTAAATCTGGCCTATATATGTATCTTTGAGTGGAAT
CCTATTTTCAAAGGTACGGGAATCTGTGTGCCCTTGTTACTGTTTTAGTGGAGAAGATTGGTGGTCAGAAATTGGGCCCCCACTGCTGAAGAACAAGAAG
GAAATTGATGGTCTCAAACCCAAAAGAAGGGCTGCGGAGAAGAAATCTCAAATGCAAATAATTTCAGTAACTGTAAATGCCTTGTTGGGATTTTGTTGAT
AATATATCTAGGAAGTTAAAATCACAAGAGACACAAAAGTAACAGCATGAAAGTTGCTTTATTTCAAGACCATGCTACCAAATTCTTGTGAGACTTGCTA
ATTGGAAGCTTCAACACTATGCTCCAAACATATAAGTAATGCTTAGCTACTAATTTTGATGAAAATTGCAACCTGAAAGTTCCATACAAAATGAAAGGAT
GACTCTTCGAATGAGATATATTTTTTTTTTCTGGAACTGACTTGGAATTCACTTGGCACCTTAGGAACTTTTAGCATGTTGGGCTGCATCCCAACAATAT
GTTCTGCCATTTGAAAATCTCTAGATATTTTTCCAAGAATCAAGAGAGAAATAGTTCTGATTTTTTAAATAATTGGATCTTGTCTGATTTTTTTATTAGT
CTTTTATAAGATTTGATGTTTATACCGTTTTAACACCTTTGAAGTTTTATTTATTGCAATCATAATTCCTTCTTAGTATTCAAAATATCTTATGATTTCT
CAATTTGATCCAAAGAACCGATAGCATTTTTCTTGAAAATAACTATTGAAAAATATATCATATTTGTTGTACTACCAATTTTCTTAAAAACTTAAACTTG
TAAGATTTGAG

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_05s0029g00560.t01 Putative uncharacterized protein protein coding CNT0007372 108 63 UTR3 Trans
VIT_05s0029g00560.t01 Putative uncharacterized protein protein coding CNT0007372 113 54 UTR3 Trans
VIT_05s0029g00560.t01 Putative uncharacterized protein protein coding CNT0007372 117 52 UTR3 Trans