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Detailed information on CNT0007471


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0001102, E-value = 2e-16 (G. max)

Expression of CNT0007471

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.8431.2052.66400.0760.1750.5910.4630.120.2grain (SRR866531)grain (SRR866540)grain (SRR866544)seeds (SRR866574)seeds (SRR866575)skin (SRR866568)skin (SRR866569)skin (SRR866570)skin (SRR866571)skin (SRR866572)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.25

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MLVSLTGQISSTQHTPHLDIPSCMSMCPMSSFHQVNGIYSGCIMASRKSLCMQCGMNWRKRTRNSLKATTLKLKLRTTVCQRQRPTN*

>peptide 2 (47 aa)
MGDSSASYIHMVQHLIENCLIFHMSKEECMEALSKHANIEPVITSTG*

>peptide 3 (77 aa)
LIIYSFVTSRTMHSLIIRLLPTPSFFFCFSLLLIFSAWLGLILGFQRSRTSSYGGLFCFIHTYGTTPNRELFDLPHE*

>peptide 4 (50 aa)
PNHIFIRDFPDYALLDHQAPTNSLILLLFLLTLDFFCLVRVDTWFSEVTD*

>peptide 5 (40 aa)
MHASFINGSNFLDPAYSTSRYTIMHEHVPYVFFSSSKWHI*

>peptide 6 (36 aa)
MISTPHPEKGRDLLYMVHKYAAHPLCLCIMNSFNMQ*

>peptide 7 (36 aa)
MNRIEVRSVTPGIFVKSCVFVEIYREWHVMFVVERS*

>peptide 8 (41 aa)
MQTSNPSSPLPVSIFRVCLMVFLKNGSNLKSVFKEKLDIQL*

Sequence

>CNT0007471
CCTAATCATATATTCATTCGTGACTTCCCGGACTATGCACTCCTTGATCATCAGGCTCCTACCAACTCCCTCATTCTTCTTCTGTTTCTCCTTACTCTTG
ATTTTTTCTGCTTGGTTAGGGTTGATACTTGGTTTTCAGAGGTCACGGACTAGCAGTTATGGGGGACTCTTCTGCTTCATACATACATATGGTACAACAC
CTAATAGAGAATTGTTTGATCTTCCACATGAGTAAAGAAGAGTGCATGGAAGCCCTCTCCAAACATGCAAACATCGAACCCGTCATCACCTCTACCGGTT
AGTATTTTTCGAGTTTGTTTGATGGTGTTTTTAAAAAACGGTTCTAATTTAAAAAGTGTTTTTAAAGAAAAATTAGATATTCAATTATAGCGTCGATTGA
TGATTCTTGGAGAAAATTTATAAAAAGATACTTCTACTAAAAACACTTCAAAGAGAAATATTCTCGCATGCATGCTAGTTTCATTAACGGGTCAAATTTC
CTCGACCCAGCATACTCCACATCTCGATATACCATCATGCATGAGCATGTGCCCTATGTCTTCTTTTCATCAAGTAAATGGCATATATAGTGGTTGCATT
ATGGCCTCTAGAAAAAGTTTGTGCATGCAGTGTGGAATGAATTGGAGAAAGAGAACAAGGAATTCTTTGAAGGCTACAACACTCAAACTCAAACTAAGGA
CGACCGTCTGTCAGAGGCAGAGACCGACGAATTGATCCAAAAGATGATATCAGATTCCACCTCTAAAGATCACCGGAGCTCCTCCAAAGATCCTGCAGAC
TCCTCCAAAGACCCAGACACATAAACCATAATATCCCATTGAAAATGATCTCTACCCCACATCCAGAAAAGGGCAGAGACTTACTGTATATGGTACATAA
ATATGCCGCTCATCCCCTTTGTTTATGTATTATGAACTCATTCAACATGCAATAACCAATCTCATTCAGTCATCTTTTAGACTGCAAATGGTTTAATTCT
ATTGAAAATTGCAAGATGAACCGAATAGAAGTAAGGAGTGTGACTCCTGGAATCTTCGTTAAGTCGTGTGTTTTTGTAGAGATATATAGAGAATGGCATG
TGATGTTTGTGGTGGAGCGATCATAGATTCATATGACATAAAGTGATGGCAACCGTTTTTGGGATTGAAGGAATGGCCTGAAATGACTGCCTCTGAG