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Detailed information on CNT0007537


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P0CH32|UBQ4_ARATH, E-value = 0.0

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005917, E-value = 2e-41 (V. vinifera)
CNT0033674, E-value = 1e-55 (P. patens)
CNT0019050, E-value = 1e-33 (Z. mays)
CNT0000474, E-value = 3e-13 (G. max)
CNT0030022, E-value = 4e-40 (O. sativa)
CNT0035799, E-value = 1e-09 (C. reinhardtii)

Expression of CNT0007537

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVSELSTSNVIVFPVKVLTKICMPPLRRRTRCRVDSF*

>peptide 2 (79 aa)
MKSRLFLDIVVCKGAAILQLFASKDEPLLIWWNPFLVLYLCFHIVNSVRALHLQCDCLPSQSLHKDLHPSSQTQHQMES*

>peptide 3 (30 aa)
MVFPVSVLTKICIPPRRRRTRWRVDSFWIL*

>peptide 4 (84 aa)
MEGRLFLDIVISKCSAIFKLFPSKDQPLLIWRNAFLVLNLSFDIINGVRTLDLKSDGLSGECLNKDLHLKYIEADNCQKLLFKIR

Sequence

>CNT0007537
GTTGAGTTAACAATGAATCTGGAGGAGTGAGGATCACCAACACATTTATCAGCTAATATTTATTTATTTAGTTTGCAGCAAAAACAACAGAATATAACAC
ATTGCGAGGTCTCTAACAGAGATAAAACTATAACAAAAACACTAGAAGTCTTGAAATAAAACAAAGCAAACATTGATACAGCCATCAAGAAATCAGCATT
AGAACGCATGAAGTTCAGAAGTTTCCACCACGGAGCCTGAGGACAAGATGAAGAGTAGACTCTTTCTGGATATTGTAGTCTGCAAGGGTGCGGCCATCCT
CCAGCTGTTTGCCAGCAAAGATGAGCCTCTGTTGATCTGGTGGAATCCCTTCCTTGTCCTGTATCTTTGCTTTCACATTGTCAATAGTGTCAGAGCTCTC
CACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCATCCCTCCTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATG
TTATAGTCTGCTAGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGAATCTTTGCTT
TGACGTTGTCAATGGTATCTGAACTCTCAACCTCCAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATGCCACCTCTAAGGCGAAGAAC
AAGGTGCAGGGTTGATTCTTTCTGAATGTTGTAATCCGCCAAGGTCCTTCCATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGAGGA
ATACCCTCCTTGTCTTGGATCTTTGCTTTAACATTGTCGATAGTATCTGAACTCTCAACCTCCAAAGTAATTGTCTTCCCTGTCAATGTCTTAACAAATA
TTTGCATGCCACCCCTCAGACGAAGAACAAGATGTAAGGTAGACTCTTTCTGAATATTGTAGTCAGCCAGGGTCCTTCCATCCTCAAGTTGCTTGCCGGC
AAAGATCAGTCTCTGCTGGTCTGGAGGAATCCCTTCCTTATCCTGAATTTTGGCCTTCACGTTGTCAATTGTATCTGAACTTTCAACTTCAAGGGTGATG
GTCTTTCCAGTAAGTGTCTTGACAAAGATCTGCATACCACCACGAAGACGGAGGACAAGATGGAGGGTAGACTCTTTTTGGATATTGTAATCAGCAAGTG
TTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGT
GTCAGAACTCTCGACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAAGATCTGCATCTGAAATATATTGAAGCAGACAACTGTCAAAAACTTC
TATTCAAGATCAGGCA

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PGSC0003DMT400010171 Polyubiquitin protein coding CNT0007537 2204 1192 CDS Cis