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Detailed information on CNT0008218


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q10064|YAMB_SCHPO, E-value = 6e-07

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs:
CNT0005691 in V. vinifera

CNT0000204 in G. max

Most similar lncRNAs:
CNT0005691, E-value = 3e-77 (V. vinifera)
CNT0041399, E-value = 2e-16 (A. thaliana)
CNT0000204, E-value = 2e-47 (G. max)
CNT0027323, E-value = 3e-31 (O. sativa)

Expression of CNT0008218

Peptides detected in this lncRNA

>peptide 1 (95 aa)
SRRRHICIHTPIIIPVWSQVRMVEDDLMYSTFLEVYENHCARTYQSHFSRSNSTKQYVDRSHQMLLLISVFKHITRSPKVSSQKAYSHSICTKHS*

>peptide 2 (31 aa)
MRTIVQGLTNHIFQGATQPSNMWTDLTRCCC*

>peptide 3 (99 aa)
MFFRDELLSWSWRRPLGMPLAPVVGAGNLNPVDFTQKVATNVENVNGRINGIAPQYISEEEENGMDPPQSVQRGVAELVEAALTPRNLCMMDPTWHPWF*

>peptide 4 (30 aa)
MIPFAVQFFPGAYRGNVSQQIVELVLLSAA*

>peptide 5 (94 aa)
MYKTLLSGNHMWAFKKQFAIQLALSSFTSFMLQIGGRSLNKILFAKNTRKIFQTDFHPAYDANGMIEFNAVDLNKLPSAAKPALMVSSGNVFPR*

Sequence

>CNT0008218
GTCCCGGCGGCGGCACATCTGCATTCACACCCCAATTATTATACCTGTGTGGTCACAGGTTCGCATGGTAGAGGATGATTTGATGTACAGCACTTTCCTG
GAGGTTTATGAGAACCATTGTGCAAGGACTTACCAATCACATTTTTCAAGGAGCAACTCAACCAAGCAATATGTGGACAGATCTCACCAGATGCTGTTGT
TGATCTCCGTCTTCAAGCATATAACGAGATCACCAAAAGTTTCGTCACAGAAAGCATATTCTCACAGTATATGTACAAAACACTCTTGAGTGGCAATCAC
ATGTGGGCTTTCAAAAAGCAGTTTGCAATCCAGTTGGCTCTTTCTAGTTTTACGTCGTTCATGCTCCAAATTGGTGGAAGGTCTCTAAACAAGATATTAT
TTGCTAAAAACACCAGAAAGATTTTCCAGACTGATTTCCATCCTGCTTATGATGCAAATGGAATGATCGAATTTAATGCTGTTGACTTAAATAAATTACC
ATCTGCAGCAAAGCCAGCTCTTATGGTATCATCTGGCAATGTTTTTCCGAGATGAGTTGTTATCTTGGTCTTGGAGAAGACCTCTTGGGATGCCTCTTGC
CCCTGTTGTAGGGGCAGGTAATCTGAACCCTGTGGACTTCACACAAAAAGTCGCTACAAATGTTGAGAATGTCAATGGGCGGATCAATGGAATAGCCCCT
CAATACATCTCAGAAGAGGAGGAGAATGGCATGGATCCGCCACAATCTGTGCAGAGGGGTGTAGCGGAGTTGGTTGAAGCTGCCCTTACTCCAAGGAACT
TGTGCATGATGGATCCGACGTGGCATCCTTGGTTCTGATTAATTTTTTTCTAATTTAGTTTTTGTGTTATGCCAACTTTTAGGTGTCTAATAGCGTAATC
TAACATTAATTAGTGACTGTATAGTCTCTTTTATTCACCTTTAGGTGATACAAGCTAGATAGTATTGTGAATATTATTGCTAGTTGCTCATGTATATAAA
TGATCCCTTTTGCCGTCCAGTTCTTTCCAGGCGCTTATAGAGGCAATGTTAGTCAGCAAATAGTGGAATTAGTTTTACTCAGTGCAGCCTAATAAGTTCA
TGCTTTTTGAGCTACTTTCGAAGAAGGTTGTGATATTTCTGTAATCGTTCTTGCTGAAGTAGCAAAGACTCAGTAATGAGGAACGTAACAGTTGAATGAA
AATAATATATAGCAGGACA