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Detailed information on CNT0008225


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q08448|YO059_YEAST, E-value = 3e-15

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0020809, E-value = 4e-07 (Z. mays)
CNT0031679, E-value = 2e-09 (O. sativa)

Expression of CNT0008225

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MHLANFIHQTTVMSSPMMQSLQLVQTSNQ*

>peptide 2 (30 aa)
MRRTSLPLRGSQSKGGSPKCTKHTEDIKIS*

>peptide 3 (101 aa)
MASSATLLHHYSPRPSISSNSSSSSSSSSASSSSSSSSFDQRRCFNWKFLCFSGCIGWTIQGVRWQTTQGVKRERGEQLRRKECNGFCANISFTFETLVS
T*

>peptide 4 (33 aa)
MMENLYQRLVLSNGVFFMLMSLMIIWSVGVHHL*

>peptide 5 (386 aa)
MGTTEGSVMSPKVLTDTGDEPEHLLVLVHGILASPSDWTYVQAELRRRLGRNFLIYASSCNTFTKTFTGIDGAGKRLADEVRLVVKKKESLKKISFLAHS
LGGLIARYALGELYSSDNCNEQSNDAVTSTSANLKPVGSLDIGLIAGLEPVNFITLATPHLGVRGKNQLPFLFGLPILEKLAAPIAPIFVGQTGSQLFLT
DGKPTKPPLLLRMASDCDDGKFISALGAFKWRVLYANVSYDHMVGWRTSSIRRVTELVKPPWRSLDGYKHVVDVEYCPPASCEGPHYPLEAAKAKEAAQN
APSTQRTLKYHESMEEEMIRGLQQLGWKKIDVSFHSAFWPFFAHNNIHVKNEFFHNAGVGVIAHVADHIKQQEKQPESSSLITPSL*

Sequence

>CNT0008225
AGAAAAGAAAAAACAACAAAAATGGAATTAGGAAAACGCCAACTACCCCTTTTTAGCTCTTTCTGAGTAGAAGAAGCTTCGTTGAGTTCAACATCAATGT
CTAGTAAAAAGCAGAGGAGGATGTTGAAAGTAAGGAAAAATGGTGGGTGTGATGTTGACATAACACACTCTGCTTAGATTGATTTGCGCGGAGGAAAAGG
AAAACAACAAAGACAATCCCCAAAGGGTCCTCTTCTCTTTCTACACTTGTTGGGTTATCCCATAGCCATATATAGCCATATATATGGCGTCATCAGCGAC
ATTACTTCATCATTATTCTCCTCGCCCTTCTATCTCTTCCAATTCTTCTTCTTCTTCTTCATCATCTTCTGCTTCTTCTTCGTCATCTTCTTCCTCTTTT
GATCAACGACGATGCTTTAATTGGAAATTTCTCTGCTTTTCTGGATGTATAGGATGGACAATTCAAGGTGTAAGGTGGCAAACAACTCAAGGTGTAAAGC
GTGAAAGGGGTGAACAACTAAGGCGTAAAGAGTGCAATGGATTTTGTGCGAATATTAGCTTCACCTTTGAGACATTGGTCAGCACATAGGGATAAACAAC
ATCTGTAGAAGTCAAAGCTTTAGAGCCCATGCAATGGGTACAACTGAAGGAAGTGTTATGTCTCCGAAAGTCTTGACAGATACGGGGGATGAACCTGAAC
ATCTTCTAGTCCTTGTTCATGGCATCTTAGCAAGCCCAAGTGACTGGACGTATGTACAAGCAGAGTTGAGAAGGCGGTTGGGAAGAAACTTTTTGATATA
TGCAAGTTCATGTAATACGTTCACTAAAACCTTCACTGGGATTGATGGAGCTGGGAAACGACTAGCAGATGAAGTCAGGCTGGTTGTAAAGAAGAAAGAA
AGCCTGAAGAAGATATCCTTTTTAGCTCATTCTCTTGGTGGATTGATTGCAAGATATGCACTTGGCGAACTTTATTCATCAGACAACTGTAATGAGCAGT
CCAATGATGCAGTCACTTCAACTAGTGCAAACCTCAAACCAGTAGGCTCCTTAGATATAGGATTGATTGCTGGCCTGGAGCCAGTCAATTTTATCACCTT
GGCAACACCACATCTTGGTGTGAGAGGGAAAAATCAGCTTCCTTTTCTCTTTGGGTTGCCAATCTTGGAGAAACTTGCAGCACCTATAGCTCCTATATTT
GTTGGTCAAACTGGTAGTCAGCTCTTCCTTACAGATGGCAAACCTACTAAACCACCTCTTTTGTTAAGGATGGCATCAGACTGTGATGATGGAAAATTTA
TATCAGCGCTTGGTGCTTTCAAATGGCGTGTTCTTTATGCTAATGTCTCTTATGATCATATGGTCGGTTGGCGTACATCATCTATAAGAAGGGTGACAGA
ACTTGTCAAGCCCCCTTGGCGATCTTTGGATGGCTACAAACATGTAGTAGATGTGGAGTATTGTCCTCCAGCTTCATGCGAAGGACCTCATTACCCCTTA
GAGGCAGCCAAAGCAAAGGAGGCAGCCCAAAATGCACCAAGCACACAGAGGACATTAAAATATCATGAAAGTATGGAAGAGGAAATGATACGTGGCTTGC
AACAGTTGGGGTGGAAAAAAATTGATGTTAGCTTTCACTCAGCGTTCTGGCCCTTTTTTGCACATAACAATATCCATGTGAAGAATGAGTTTTTTCACAA
TGCTGGAGTAGGAGTAATTGCTCATGTCGCAGACCACATAAAGCAACAAGAGAAGCAACCTGAATCTTCCTCCTTAATTACCCCTAGCTTGTAACTCATA
TAGTTGTACAGAAAGCAATCCAGCATACATTTAAATGAAATCAAAACGCTATAATTGATTGGAAATGTATATTTTTCTGAACACTACTGGTTTACTTGGT
TATAAGCCAGGTTTTTCGTTAAGCATATTCAAGATATATGTATAGTGATATGATTTTTGGTGAAGGGTGTTTAATTGACCACCCTTTGCTCCGTCACCAG
TTTCAATAGGAAGACTGTTGATGTTAGCATTGTACCCTGTATTGGTTGTTATCTATGACATATTATGTGATTTGCTCTTTTCCGTGTTCG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PGSC0003DMT400085240 NADH-ubiquinone oxidoreductase chain 4 protein coding CNT0008225 89 74 CDS Trans
PGSC0003DMT400091836 Gene of unknown function protein coding CNT0008225 104 74 CDS Trans