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Detailed information on CNT0008536


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8LEF6|AB11I_ARATH, E-value = 3e-108

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0001897, E-value = 5e-12 (G. max)

Expression of CNT0008536

Peptides detected in this lncRNA

>peptide 1 (276 aa)
MGSIPLPSLSLLISSSNSSIFGRSSTFSYPPGRFRKAEALSVSCDYSCFEIRDVSYRPPGTKIDLLSQVNLSIPEKSFGLIFGRSGSGKTTLLQLIAGLS
KPTSGSIYVQRYSDDDEQIKSPEPLQPERVGIVFQFPERYFVADTVLDEVTFGWPRQKGGLQLRELLASRLQKAIMSVGLTGISLDKDPHSLSGGYKRRL
ALAIQLVQTPDLLILDEPLAGLDWKARADVAKLLKDLKKELTLLVVSHDLKELASLVDQSWRMEMGGALKREPLPI*

>peptide 2 (44 aa)
MGLQHFLCPSLLPKVLNVDWNFVQNMYYCMHVLVNKITLLNIHE*

>peptide 3 (55 aa)
MCRDIVMMMNRLSLLNPYNLKELALFSNFLRDTLLPTLFLMKLHLGGQDKRVAYN*

Sequence

>CNT0008536
TTCGACCCGTCCACAACCCAGGAACCCAACAACACAATCTAAATAACCCACCTCAATTGCGGCGCTAACGTCCATCTCCCCCAATTTTCTCTGGTTACAT
TTTTGTTCCTTAGGCTCAGAGTTCAGAAAATGGGGAGCATTCCACTTCCCTCGTTGTCTCTACTAATTTCCAGTTCCAACTCCTCCATTTTTGGAAGATC
ATCAACGTTTTCCTATCCTCCCGGGCGATTCAGAAAGGCGGAAGCACTATCCGTTTCCTGCGATTACTCCTGTTTTGAAATAAGGGATGTCTCTTATCGA
CCTCCAGGAACCAAGATCGATCTATTGAGTCAAGTCAACCTTTCCATCCCTGAAAAAAGTTTTGGCTTGATATTTGGACGGAGTGGCAGTGGAAAAACTA
CTCTATTGCAGCTGATTGCAGGGTTAAGCAAACCAACGTCAGGTTCCATATATGTGCAGAGATATAGTGATGATGATGAACAGATTAAGTCTCCTGAACC
CTTACAACCTGAAAGAGTTGGCATTGTTTTCCAATTTCCTGAGAGATACTTTGTTGCCGACACTGTTCTTGATGAAGTTACATTTGGGTGGCCAAGACAA
AAGGGTGGCCTACAATTAAGAGAGCTTCTTGCTTCTAGACTTCAAAAGGCCATTATGTCGGTTGGTCTAACAGGAATATCCTTGGATAAGGATCCCCATT
CATTAAGTGGTGGCTACAAACGTCGGCTAGCCCTTGCTATTCAGTTAGTTCAAACACCAGATTTATTAATATTGGATGAGCCTCTTGCCGGTCTTGATTG
GAAGGCTCGTGCAGATGTGGCAAAATTGTTAAAGGATCTAAAGAAGGAGCTAACTTTACTTGTTGTCAGCCATGACCTCAAGGAGTTGGCATCTTTGGTA
GATCAATCTTGGAGGATGGAAATGGGAGGAGCACTTAAAAGAGAGCCACTACCCATTTAATACTCAGAACTTATAATGTTCCTAATAATCATTTTCTGAT
GTAATATATGAGTTCCCAAAAGGCCAAAAGTGGCCATCCTTCTTCCCACGTTCCCATGTCCACAGACTACAGCAGCATCGACTGAGTTTTGGCGACCGAC
GACCAAGAGTAGCACGCAGCAACCGCCAGTCGACCAGCAGGCAGCCGCAACATAGCAGCCGACCTTTCCAGTTTCCACACAGCCAGGTGCCAGCCGTGAG
CCGATCATCGACCACTTTCCACTTCCACCGACCACCATAGGTTTTTATGAGACGTGAATTACATACAATTCTTGGAGAGGTGCTCAAGGTTATTGATTTT
ACTTCAATCCCTGACTATTGAGATCTTCACATTTCATGTAACCTCTTAAATGTAATTAACAGTTTCTGTAATGAGTTTTGAGATAGTTTCTAACTTTCTA
TAGCATAGCACTTAGTTTGTTCTTCAAATTTAATTAAAGTTTGATGGGTCTGCAGCATTTTCTTTGTCCTAGTCTCTTACCAAAAGTTTTGAATGTCGAT
TGGAATTTTGTTCAAAATATGTATTATTGTATGCATGTATTGGTAAATAAAATTACACTGTTGAACATACATGAATAGTAGCTTTTCTAGTTGTG