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Detailed information on CNT0008543


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q54T85|TRA1_DICDI, E-value = 1e-22

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005691, E-value = 1e-46 (V. vinifera)
CNT0040991, E-value = 3e-23 (A. thaliana)

Expression of CNT0008543

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MFRLSVYPKGTAGGPQTCSWDRLQEGFVSPY

>peptide 2 (164 aa)
PTSSVSSLGEADVKPMEVSDQMSTSNGYFGAGQLNPTTRSFKIVTESPLVVMFLFQLYGRLVQTNIPHLLPLMVSAISVAGPEKVPPHLKTHFIELKGAQ
VKTVSFLTYLLKSFADYIKPHEESICKSIVNLLVTCSDSVSIRKELLVALKHVLGTDFKRGLFPL

Sequence

>CNT0008543
GCCCACGTCGTCTGTGTCCTCTTTGGGTGAGGCAGATGTTAAGCCAATGGAGGTGTCAGATCAAATGAGTACTTCTAATGGGTATTTTGGTGCTGGTCAG
CTTAATCCCACTACGAGATCATTTAAGATAGTTACTGAGAGTCCGTTGGTGGTGATGTTCCTGTTTCAATTATATGGCCGGCTGGTTCAGACAAATATTC
CCCATTTGTTGCCCTTGATGGTTTCAGCCATATCAGTGGCGGGGCCTGAGAAGGTGCCTCCTCATTTGAAGACCCACTTTATTGAACTGAAGGGTGCGCA
GGTTAAGACAGTTTCTTTCTTGACTTACCTGTTGAAGAGTTTTGCTGACTACATTAAGCCGCATGAAGAGAGTATATGTAAAAGCATTGTGAATCTGCTT
GTCACATGTTCAGACTCAGTGTCTATCCGAAAGGAACTGCTGGTGGCCCTCAAACATGTTCTTGGGACAGACTTCAAGAGGGGTTTGTTTCCCCTTAT