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Detailed information on CNT0008938


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005926, E-value = 7e-11 (V. vinifera)
CNT0042553, E-value = 7e-11 (A. thaliana)
CNT0035158, E-value = 4e-09 (P. patens)
CNT0021574, E-value = 7e-11 (Z. mays)
CNT0002248, E-value = 2e-11 (G. max)
CNT0022384, E-value = 7e-11 (A. trichopoda)
CNT0031296, E-value = 2e-11 (O. sativa)

Expression of CNT0008938

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTIFLHSLSCQNIVVCGHNFIIIIFFLFFF*

>peptide 2 (53 aa)
SCSKFPRRSPLRFSWFAIRIWLLWWKNRCPLKLVVSGRCSGRGNIMSFCSLCI*

>peptide 3 (78 aa)
MLLKISSKTRNGLYTYCIQRLYTDISVQDKKYVSKNKVTGRRRQRRLYIVDMRFNIQEKWLRNDLYTKNIRLTYTQGL*

>peptide 4 (33 aa)
MILCSFNIIVCLVFFLVHFKLNQIFYFIFIFLF*

>peptide 5 (55 aa)
MFVLLFLKMKYSMLVQSHVVYIYMYIYIYIYILNLIYCFLHVFGLWDNINDYFPP*

>peptide 6 (38 aa)
MGCIHTVYSVYTLIYRFRTKNMCPKIKLQVGGVREGCI*

>peptide 7 (30 aa)
LVLSFREGRRSDFLGLLFVFGFCGGRIVAL*

Sequence

>CNT0008938
TCTTGTTCTAAGTTTCCGAGAAGGTCGCCGCTCAGATTTTCTTGGTTTGCTATTCGTATTTGGCTTTTGTGGTGGAAGAATCGTTGCCCTCTAAAGCTCG
TTGTCTCCGGTCGCTGCTCCGGAAGAGGTAATATTATGTCGTTTTGTTCTTTGTGTATATGATGTTTTGATTCATTTATGATATTATGCTCGTTTAATAT
TATAGTTTGTTTAGTTTTCTTTTTAGTTCATTTTAAATTGAATCAAATTTTTTATTTTATTTTTATTTTTTTGTTTTAGTTAATTTGCTAGGTGATTTGA
AATTATGTAGTCAATGCTTGTCTATTTAATTTATCTCTGTTAGCTTAAGTATTGACTAACTCAAGAAGCTCTCATGTTTGTCCTACTATTCTTGAAAATG
AAGTATTCAATGTTAGTCCAATCTCATGTAGTATATATATATATGTATATATATATATATATATATATATTAAACCTCATATATTGTTTTCTTCATGTAT
TTGGGTTGTGGGACAACATAAATGACTATTTTCCTCCATAGTCTTTCTTGCCAGAATATAGTTGTATGTGGCCATAATTTTATTATTATTATATTTTTTT
TATTTTTTTTTTAGTTCACCTTTAATCTTGCTTTGCCTCACTTAGTCGATGTTATATCTTCCTACTTAGTTAAGAAGCTCATTTGATTAATTGGCTTGTT
TTAATCTTAATTAACTACTGCAATTATCTCATTTATTTGGATATAAGTCATTCGTCTTTTGTTTAGAAGTGCTTTTATTTTGCAATTATGTTTGTATCTC
CTAAAGTGATTTATGTGTTTACTTCTATCTTGAATTGATTACTTGATTGCCGTTCGTTGGAATTTTATCTATATTCTAATTCTTGGTTATTTTATTTTTT
GTTGCATAAAATCTGCCCAAGTCCTCACGGACTCAATCTTTGCATTTCGGATGAGCCATAAAGGCCCAAATTTCTTTTATCGAGTCAGCCCCTATATATT
CGGAAGCTGTTACAGGTCCTGAAGACCCAACATGTTGCTGAAAATTAGTTCAAAAACTCGAAATGGGCTGTATACATACTGTATACAGCGTTTATACACT
GATATATCGGTTCAGGACAAAAAATATGTGTCCAAAAATAAAGTTACAGGTCGGAGGCGTCAGAGAAGGCTGTATATAGTTGATATGCGGTTCAATATAC
AAGAAAAATGGCTTAGAAACGACCTGTATACAAAAAATATACGTTTGACGTATACACAAGGTCTCTAAGGGCAGACATTAAGCTGAGGCCCAAATCAGTT
GCAGCAGGCCCAAGAAGGGCCCAAATTCATTTATCCTTTACTCTTAACTTATTCAATTGTGTGATTATATTTTTTTTTATTATTATTATTTAACTCTAAC
TTTTAAATGACTTAATTAAATTCCCCAAAAGATGAACCATATTGTTTATGTTAAGTTTATTTTTAATTTAGTTTTCCCCTTTTTTG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PGSC0003DMT400049085 Uridylate kinase plant protein coding CNT0008938 139 73 CDS Trans
PGSC0003DMT400075841 D-galacturonic acid reductase 1 protein coding CNT0008938 139 104 CDS Trans