Detailed information on CNT0000902


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0003834, E-value = 6e-06 (V. vinifera)
CNT0018242, E-value = 7e-09 (Z. mays)

Expression of CNT0000902

Peptides detected in this lncRNA

>peptide 1 (43 aa)
VVANLRYMYTFIVIHTHSVLAFPSFFLSFFLFFLSWYPLVFRK*

>peptide 2 (50 aa)
MYTFSVIHTHSFLAFPSFFLFSFFLGINWCSENDDSKIGKAQIKGKQSGG*

>peptide 3 (68 aa)
CCCKFKIYVHIHCNPYAFCFGLSFFLSFFLSFFSFLVSIGVQKMMILKLERLRSKGSNSGVEKICSDG*

>peptide 4 (34 aa)
MMILKLERLRSKGSNLEVKKFAATAKNTLVALYR*

>peptide 5 (41 aa)
MFDSVYLILPIIIKHVICRGFTRFMIISSKSYYVKPAMERN*

>peptide 6 (34 aa)
MYRSDQISYGEEKKTEFDSTRNFFLVNLPVIIFT*

>peptide 7 (45 aa)
MYSIFKEFLFLELRILCNLVSCQRRIFQVSIEDWNTFVLFSPLYV*

>peptide 8 (52 aa)
MYAILKEFLFLYSFISYVVLRILCNLVSCQRRIFPVSIENWNTFVLFSPLYV*

Sequence

>CNT0000902
TGTTGTTGCAAATTTAAGATATATGTACACATTCATTGTAATCCATACGCATTCTGTTTTGGCCTTTCCTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTT
CTTTCTTGGTATCCATTGGTGTTCAGAAAATGATGATTCTGAAATTGGAAAGGCTCAGATCAAAGGGAAGCAATTCTGGAGTTGAGAAAATTTGCAGCGA
CGGCTAAAAACACTCTCGTAGCTCTTTATCGGTAACATCATCATCAAACTTTTATGTTAAGAACTTTGATGATGATGCTACTGATAAATAACTACGAGAT
CTGTTTAGTTCATGTGGCACAATAACGATCACCTGTAAGTAGCTTTCTTGGCTGCATGCAAGACCAGTAGGGTCCTGATGTTGTTGTGCTTTGCTGAAAT
TCCTACTAGTTTCTGGATTGGTTGGGTTAAAGAGTAAATCATGAACTTCTTGTAGCACTTTCAATTATTTTCTTCTTTTCGTTTTGTGTCTCGCATCTTT
TTGTATTGATTAAGTTAGTCTGTGGTGAAATATGTATGCAATTTTGAAGGAATTTCTTTTTCTTTACTCGTTCATATCTTATGTTGTATTGAGAATTTTG
TGTAATCTTGTAAGTTGTCAACGAAGAATTTTCCCAGTTTCAATAGAAAACTGGAATACATTTGTTTTGTTTTCTCCTTTGTATGTTTGATAATGTATAT
TTAATTTTACCGATTATCATACAGCATGTTATCTGCAGAGGTTTTACTTGATTTATGATCATTTCCAGCAAGTCATATTATATTAAACCAGCAATGGAAA
GGAACTAATTATAAGTAACATTAAATCCATGTTTTATGCAATTCCTAACCAATTTCTTTAATTTAATTAATTTAACCCTAATTCCTTAGATGATAAATCA
TTTTTCCCCTACTGTGAACAATATAATAATCCCTTAAGAGAGCAAGATTAGTCATAACTCATAAGCATTGAGAGAAGAAAATTCACATGGAAGCATACAA
TATATTTGTATCCCTAGGCTCAAGAGTTTTAAAGTTTATTGAACTGAAAGAGTCTAAATTCCAATAAATTCAATAATTAAATAAGAAAATAAGAGAAGGA
TTTAGAAAATAAAAAAAAGGAGAAAATAGAACCTGTGTGCATAGCATATATACGATACAGCAATTTGTTAGGTTCTGTAAAACTAACTGTCAAATTCAAA
AATGTACAGATCAGACCAGATCAGCTATGGTGAAGAAAAAAAAACTGAATTTGATTCTACTAGAAATTTCTTTTTAGTTAACTTACCTGTTATAATTTTT
ACTTAATAAAAACTGTTATAAGAACAGTTGTTGCAAATTTAAGATATATGTACACATTCAGTGTAATCCATACGCATTCTTTTTTGGCCTTTCCTTCTTT
CTTTCTTTTTTCTTTCTTTCTTGGAATCAATTGGTGTTCAGAAAATGATGATTCTAAAATTGGAAAGGCTCAGATCAAAGGGAAGCAATCTGGAGGTTAA
AAAATTTGCAGCGACGGCTAAAAACACTCTCGTAGCTCTTTATCGGTAACATCATCATCAAACTTTCATGTAAAGAACTTTGATGATGATGTTACTGATA
AATAACTACGAGATCTGTTTGGTTCATGTGGCACAATAACGATCACCTGTAAGTACCTTTCTTGGCTGCATGCAAGACCAGTAGGGTCCTGATGTTGTTG
TGCTTTGTTGAAATTCCTACTAGCTTCTGGATTGGTTGGGTTAAAGAGTAAATCATGAACTTCTTGTAGCACTTTCAATTATTTTCTTCTTTTCATTTTG
TGTCTCGCATCTTTTTGTATTGATTAAGTCAGTCTGTGGTGAAATATGTATTCAATTTTCAAGGAATTTCTTTTTCTTGAATTGAGAATTTTGTGTAATC
TTGTAAGTTGTCAACGAAGAATTTTCCAAGTTTCAATAGAAGACTGGAATACATTTGTTTTGTTTTCTCCTTTGTATGTTTGATAGCGTATATTTAATTT
TACCAATTATCATAAAGCATGTTATCTGCAGAGGTTTTACTAGATTTATGATCATTTCCAGCAAGTCATATTATGTTAAACCAGCAATGGAAAGGAACTA
ATTATAAGTAACATTAAATCCATGTGCTAATCAATTCCTAACCAATTTCTTTAATTTAATTAATTTAACCCTAATTCCTTAGATGATAAATCCTTTTTCC
CCTAATGTGAACAATATAATAATCCCTTAAGTGAGCAAGATTAGTCATAACTCAAAAGCATTAAGAGAAGAAAA

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA07G11790.1 Uncharacterized protein protein coding CNT0000902 732 312 CDS Cis
GLYMA07G11790.1 Uncharacterized protein protein coding CNT0000902 882 320 CDS Cis