Detailed information on CNT0009174


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9ZPX1|ARF5_ARATH, E-value = 1e-44

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0021710, E-value = 5e-30 (A. trichopoda)

Expression of CNT0009174

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MLLSCPVSIMCLFLFIVVITLLINSNLHIQDVFCQAMFMWLDEYLDCFIPNDQN*

>peptide 2 (30 aa)
MSGGRKQYDLIGETTLSKPMAWCGLWIVLI*

>peptide 3 (56 aa)
MGKTRVSSVQLLASTSKPSRMRSMVSLFLFLRLHVAVLSCFNNVFVLVYCCYYSVN*

>peptide 4 (31 aa)
MGLLSIIRKMKRNEKKMRILMVQVHKLILFT*

>peptide 5 (63 aa)
MKLPMLWTIAGVHTQEKAYLKDLISWYKTLHHESICLINYKFCIYYFEYIFRSNVLAGCSSVD*

>peptide 6 (99 aa)
MLYIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCRYELHNLLKEERLSRASLLIFANKQDIQGALSPDEIANAMDNSRRAYTGEGLLEGFD*

>peptide 7 (53 aa)
SKFKIRKAQSSNILYIYRKCDHGKFLFISRFRSVGGERAVPRLRSRLDLNSLP*

>peptide 8 (42 aa)
PNSKLERPNQVIFSTYTGNVTMENFCSSRDSDLLVAREQFRG*

Sequence

>CNT0009174
CTCCAAATTCAAAATTAGAAAGGCCCAATCAAGTAATATTCTCTACATATACCGGAAATGTGACCATGGAAAATTTCTGTTCATCTCGAGATTCCGATCT
GTTGGTGGCGAGAGAGCAGTTCCGAGGCTGAGGTCGAGGTTGGATCTCAATTCACTGCCCTGAAATAGGAAACCAATGGGACTTCTCAGCATTATTCGAA
AGATGAAGCGAAATGAAAAGAAAATGCGGATCCTTATGGTGCAAGTCCACAAGCTAATTCTGTTTACATAGCATATTGATTAATTCTGTTTATTCTGTAG
GGGTCTTGACAACTCTGGTAAGACAACAATAGTTTTAAAAATAAATGGGGAAGACACGAGTGTCATCAGTCCAACTCTTGGCTTCAACATCAAAACCATC
GCGTATGAGAAGTATGGTTTCTCTGTTTTTGTTTCTCAGATTGCATGTTGCTGTCCTGTCCTGTTTCAATAATGTGTTTGTTCTTGTTTATTGTTGTTAT
TACTCTGTTAATTAACTCTAACCTGCATATCCAAGATGTATTTTGTCAGGCAATGTTCATGTGGTTGGATGAATATTTAGATTGTTTTATTCCAAACGAT
CAAAATTGAGTCATTTAAAGATATTTTTACCTTTTGAATCGTCTTCTAAGGCTTTGGTTTAGCCTATCAATGAATCGACTATGTTTTAATGCAAAATAAG
TTGGGATATTGTTAGCCTGTTTTTACTCTGTCATCAACCTACCACACCCTCCTTTCTTCAGGTATATGCTCTATATATGGGATGTCGGGGGGCAGAAAAC
AATACGATCTTATTGGAGAAACTACTTTGAGCAAACCGATGGCTTGGTGTGGGTTGTGGATAGTTCTGATTTGAGAAGGCTAGATGACTGCAGATACGAG
CTACATAATCTTCTGAAGGAGGAGAGGCTATCAAGAGCATCATTATTGATTTTTGCAAATAAGCAGGACATACAAGGCGCGCTTTCTCCAGATGAAATTG
CCAATGCTATGGACAATAGCCGGCGTGCATACACAGGAGAAGGCCTACTTGAAGGATTTGATTAGCTGGTACAAGACGTTGCATCACGAATCTATATGCT
TGATTAATTACAAGTTTTGCATTTACTATTTCGAATATATTTTTCGGAGCAATGTACTTGCTGGCTGCTCATCTGTGGACTGACCATATGTGAGGCAAAT
TATTTTCCCAATATGATGCAAAGAGTCTATGTTATCCACTCCTTGAGCCAATATACATAATACTTGCATTTAGATATCAATACAACTACATAAATTCATT
CAGTTCAAA