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Detailed information on CNT0009344


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|F4JKK0|SUD1_ARATH, E-value = 7e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005350, E-value = 1e-06 (V. vinifera)
CNT0043554, E-value = 3e-10 (A. thaliana)
CNT0002798, E-value = 5e-06 (G. max)
CNT0022638, E-value = 1e-09 (A. trichopoda)
CNT0039786, E-value = 1e-06 (S. moellendorffii)

Expression of CNT0009344

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MLVHVYSTVATASCCVKFAAERMDDCEKTTHSRNAVGVSDYVD*

>peptide 2 (83 aa)
MLLLVLRHTLPVIVNQAEDYSFPLVMLLLLRITGIVLPIYIILKAVTSCHRRQHQQAVLPISSSDEESGPVILSHQPPIIIAP*

>peptide 3 (202 aa)
MGDHFVFLVDRLLTESTLEAAIESRNPKQLASPTTNSSVTDCSSQDSDPLSPRKMVECRICQDEDMDSNMEVPCSCCGSLKYAHRRCVQRWCNEKGDTIC
EICHQPFRPGYTAPPPIFRLGGIPMNFRGNWGIVRRDLNNPRLIAVVSTDRNFINSDDYDDDYAVSTSRSMMCCRSVAIIVISLSFSLSLSHTHTRARAS
AF*

>peptide 4 (43 aa)
MHIGDVCKGGVTRRVIPFVRYATSLLGLVIRHLPLFFDLEASQ*

Sequence

>CNT0009344
TATTACTCCATTTCTCATTTTGATTCTTTGAAATTTTTGAGTGCTTAAACAAACGAAGACACTCAATCTCTTGCTTCATTCTAAAAGAGAGATCTTTTTT
AAGATTTAGAAAAAAAAATAGAGCTTTCTTAGCTTGTAGATATCCGATCCCCTTCTTGCAATTCTGGTGGAAAGCTGATTGTTTAAGGCATCACTGTCTC
TGTTACATCAAAAAATAATTAAAAAGTGGTTTTTAGCTGATATTGGTTACATAAGAATGGGAGATCATTTTGTGTTTCTGGTTGATCGGTTGCTAACTGA
ATCAACTTTGGAGGCTGCAATTGAAAGCAGAAACCCGAAACAGCTAGCATCACCGACAACAAATAGCTCGGTAACTGATTGCTCTTCCCAGGATTCTGAT
CCTCTGAGCCCTAGGAAGATGGTTGAATGCAGGATATGCCAAGATGAAGATATGGATTCAAATATGGAAGTTCCTTGCTCTTGCTGCGGTAGCTTGAAGT
ATGCACATCGGAGATGTGTGCAAAGGTGGTGTAACGAGAAGGGTGATACCATTTGTGAGATATGCCACCAGCCTTTTAGGCCTGGTTATACGGCACCTCC
CCCTATTTTTCGACTTGGAGGCATCCCAATGAATTTTAGGGGAAACTGGGGAATTGTTAGAAGAGACTTGAATAACCCTCGACTGATAGCTGTCGTTTCA
ACTGATCGTAATTTCATCAACTCTGACGACTATGATGATGACTACGCGGTCTCTACATCGAGAAGCATGATGTGTTGTCGTTCAGTTGCAATAATTGTAA
TTTCTCTCTCTTTCTCTCTCTCTCTCTCTCACACACACACGCGCGCGCGCGCTAGTGCATTTTAGTTAAGACTTTGAAAAGAAAGCATGAGATTCTTCAA
TAACTAGCTTTTGTGCCAGGAAACATCAGTACGATAAGCAAATGTGATCTGCCACTGCAGGATATCCCATTTGGACGATTTCTAAATTTTAAGTTTAGCA
ATTTGATTCTGTCTTTTTGTTTCCTTTCTAAACAGTTTATGCTGCTTCTGGTTTTACGACACACACTTCCCGTCATAGTGAATCAAGCAGAGGACTATTC
GTTCCCGTTGGTCATGCTACTACTGCTGAGGATTACTGGCATTGTCCTGCCTATCTACATCATACTGAAAGCAGTTACCTCTTGCCACCGTCGCCAACAC
CAGCAGGCTGTTTTACCAATCTCCTCGTCTGATGAAGAATCTGGCCCCGTGATACTCTCACATCAACCTCCCATCATCATCGCCCCTTGAAAGTACTAGA
TATATGTTAGTTCATGTTTACTCTACTGTTGCTACAGCGTCCTGCTGCGTAAAATTTGCTGCAGAGAGGATGGATGACTGCGAAAAGACTACACATTCGC
GTAATGCAGTTGGTGTTTCAGATTATGTAGATTGAAGAAATATCAAAAAAAGGAAAAAACAAAGTCAAAAAGGCTATAAAAAGGAAAAAGATTTCAAGGT
TATGGATTAGTTAGAAATCTTTGTACAGTCAGTTAAAGTTCAACCATGTATATGAACACATGGATGGGAATACAAAATGTGGCAAGTTAGTTAAAACTTT
ATAATATATGATATCCAGTCTTTTTCCTTGCACAATTCTATAGTGGTTGGTGATTTATG