Detailed information on CNT0009490


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8H159|UBQ10_ARATH, E-value = 4e-118

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs
:
CNT0033674 in P. patens

Most similar lncRNAs
:
CNT0005917, E-value = 3e-52 (V. vinifera)
CNT0033674, E-value = 8e-96 (P. patens)
CNT0019050, E-value = 1e-42 (Z. mays)
CNT0000474, E-value = 8e-22 (G. max)
CNT0030022, E-value = 1e-63 (O. sativa)
CNT0035799, E-value = 5e-20 (C. reinhardtii)

Expression of CNT0009490

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MMVFPVRVLTKICIPPRRRRTKCRVDSFWML*

>peptide 2 (43 aa)
MPSLSWILALTLSIVSELSTSRVMVFPVRVFTKICICKFIKTTI

>peptide 3 (31 aa)
MVSELSTSKVMVFPVKVFTKICIPPLSLSTK*

>peptide 4 (86 aa)
MGNRHSQTTRQPTTGNLKTTTETEDKVQSGLLLDIVVGKGASIFKLLTSKDQPLLVWWDPLLVLNLSFHIVDGVRTLHLQGDGLPG*

>peptide 5 (37 aa)
QTAIRKETRNWMFIKTPLLFTNEKQKGTESENTLMIL*

>peptide 6 (73 aa)
MQTHNHHNGQQTQPDNTTTNNRQLKNHHGDGGQGAEWTPSGYCSRQGCVHLQAAYQQRSTSAGLVGSPPCPES*

Sequence

>CNT0009490
TCAAACTGCGATCAGAAAAGAAACCAGAAATTGGATGTTCATAAAGACGCCATTATTATTCACAAATGAGAAACAGAAAGGAACAGAAAGCGAAAACACA
TTGATGATCCTTTAAGACCATAATGCAAACACATAACCACCACAATGGGCAACAGACACAGCCAGACAACACGACAACCAACAACAGGCAACTTAAAAAC
CACCACGGAGACGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCGGCAAGGGTGCGTCCATCTTCAAGCTGCTTACCAGCAAAGATCAA
CCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCGATGGTGTCAGAACTCTCCACCTCCAAGGTGATGGTCTTCCCG
GTTAAGGTCTTCACAAAGATCTGCATTCCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCAT
CCTCCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTGTCGGAGCT
TTCAACCTCCAAATGATGGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCATACCACCACGGAGACGGAGGACCAAATGTAGGGTAGACTCCTTCTGGA
TGTTGTAGTCAGCTAGGGTGCGGCCATCTTCCAACTGTTTCCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTAGC
CTTAACGTTGTCGATTGTATCAGAACTTTCCACCTCTAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATCTGCAAATTCATAAAAACA
ACAATC

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PGSC0003DMT400057275 Polyubiquitin protein coding CNT0009490 1709 880 CDS_UTR Trans
PGSC0003DMT400057276 Polyubiquitin protein coding CNT0009490 1709 880 CDS_UTR Trans