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Detailed information on CNT0009678


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8H159|UBQ10_ARATH, E-value = 1e-158

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005917, E-value = 4e-52 (V. vinifera)
CNT0033674, E-value = 4e-64 (P. patens)
CNT0019050, E-value = 1e-42 (Z. mays)
CNT0000474, E-value = 4e-15 (G. max)
CNT0030022, E-value = 3e-62 (O. sativa)
CNT0035799, E-value = 4e-21 (C. reinhardtii)

Expression of CNT0009678

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVFPVRVLTKICIPPRRRRTRWRVDSFWML*

>peptide 2 (33 aa)
VIDGGKSKNKYSNCDQKRNQKLDVHKDAIIIHK*

>peptide 3 (40 aa)
MVSELSTSKVMVFPVRVLTKICIPPRRRRTKCRVDSFWML*

>peptide 4 (31 aa)
MVSELSTSKVMVFPVKVFTKICIPPLSLSTK*

>peptide 5 (73 aa)
MQTHNHHNGQQTQPDNTTTNNRQLKNHHGDGGQGAEWTPSGYCSRQGCVHLQAAYQQRSTSAGLVGSPPCPES*

>peptide 6 (86 aa)
MGNRHSQTTRQPTTGNLKTTTETEDKVQSGLLLDIVVGKGASIFKLLTSKDQPLLVWWDPLLVLNLSFHIVDGVRTLHLQGDGLPG*

>peptide 7 (43 aa)
MPSLSWILALTLSIVSELSTSRVMVFPVRVFTKICICKFIKTTI

Sequence

>CNT0009678
GTAATAGACGGAGGCAAAAGCAAAAACAAATACTCAAACTGCGATCAGAAAAGAAACCAGAAATTGGATGTTCATAAAGACGCCATTATTATTCACAAAT
GAGAAACAGAAAGGAACAGAAAGCGAAAACACATTGATGATCCTTTAAGACCATAATGCAAACACATAACCACCACAATGGGCAACAGACACAGCCAGAC
AACACGACAACCAACAACAGGCAACTTAAAAACCACCACGGAGACGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCGGCAAGGGTGCG
TCCATCTTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCGATGGTGTCA
GAACTCTCCACCTCCAAGGTGATGGTCTTCCCGGTTAAGGTCTTCACAAAGATCTGCATTCCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTGGACTCCT
TCTGAATGTTGTAGTCCGCAAGGGTGCGGCCATCCTCAAGCTGTTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGAT
CTTGGCCTTAACATTGTCAATGTGATGGTCTTCCCGGTGAGGGTCTTAACAAAAATCTGCATACCACCACGGAGACGGAGGACAAGATGGAGGGTAGACT
CCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCGTCCTCCAATTGCTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCCTG
GATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCATACCACCACGG
AGACGGAGGACCAAATGTAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCATCTTCCAACTGTTTCCCTGCAAAGATCAACCTCTGCT
GGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACCTCTAGGGTGATGGTCTTTCCGGTGAGAGT
TTTCACAAAGATCTGCATCTGCAAATTCATAAAAACAACAATC

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PGSC0003DMT400057275 Polyubiquitin protein coding CNT0009678 1347 612 CDS_UTR Trans
PGSC0003DMT400057276 Polyubiquitin protein coding CNT0009678 1347 612 CDS_UTR Trans