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Detailed information on CNT0009679


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 2e-90

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs:
CNT0005917 in V. vinifera

Most similar lncRNAs:
CNT0005917, E-value = 3e-52 (V. vinifera)
CNT0033674, E-value = 8e-56 (P. patens)
CNT0019050, E-value = 6e-38 (Z. mays)
CNT0000474, E-value = 1e-17 (G. max)
CNT0028472, E-value = 7e-47 (O. sativa)
CNT0035798, E-value = 1e-23 (C. reinhardtii)

Expression of CNT0009679

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MQTHNHHNGQQTQPDNTTTNNRQLKNHHGDGGQGAEWTPSGYCSRQGCVHLQAAYQQRSTSAGLVGSPPCPES*

>peptide 2 (86 aa)
MGNRHSQTTRQPTTGNLKTTTETEDKVQSGLLLDIVVGKGASIFKLLTSKDQPLLVWWDPLLVLNLSFHIVDGVRTLHLQGDGLPG*

>peptide 3 (53 aa)
MPSLSWILALTLSMVSELSTSRVIVLPVRVLTKICIPPRRRSTKWRVDSFWML*

>peptide 4 (34 aa)
GVIDGGKSKNKYSNCDQKRNQKLDVHKDAIIIHK*

>peptide 5 (31 aa)
MVSELSTSKVMVFPVKVFTKICIPPLSLSTK*

Sequence

>CNT0009679
GGTGTAATAGACGGAGGCAAAAGCAAAAACAAATACTCAAACTGCGATCAGAAAAGAAACCAGAAATTGGATGTTCATAAAGACGCCATTATTATTCACA
AATGAGAAACAGAAAGGAACAGAAAGCGAAAACACATTGATGATCCTTTAAGACCATAATGCAAACACATAACCACCACAATGGGCAACAGACACAGCCA
GACAACACGACAACCAACAACAGGCAACTTAAAAACCACCACGGAGACGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCGGCAAGGGT
GCGTCCATCTTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGAATCTTAGCTTTCACATTGTCGATGGTG
TCAGAACTCTCCACCTCCAAGGTGATGGTCTTCCCGGTTAAGGTCTTCACAAAGATCTGCATTCCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTGGACT
CCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCATCTTCCAACTGTTTCCCTGCAAAGATCAAC
CTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTAGCCTTAACATTGTCAATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGTCTTACCCG
TAAGAGTCTTAACGAAGATCTGCATACCACCACGTAGACGGAGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGTCCGTC
CTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGGGGAATTCCTTCCTTATCCTGAATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTT
TCCACCTCTAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATCTGCAAATTCATAAAAACAACAATC

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PGSC0003DMT400057275 Polyubiquitin protein coding CNT0009679 1134 535 UTR3 Trans
PGSC0003DMT400057276 Polyubiquitin protein coding CNT0009679 1134 535 UTR3 Trans