« Back to Solanum tuberosum search


Detailed information on CNT0009867


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8H159|UBQ10_ARATH, E-value = 0.0

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs:
CNT0019050 in Z. mays

CNT0028514 in O. sativa

CNT0035799 in C. reinhardtii

Most similar lncRNAs:
CNT0005917, E-value = 7e-42 (V. vinifera)
CNT0033674, E-value = 1e-86 (P. patens)
CNT0019050, E-value = 1e-43 (Z. mays)
CNT0000474, E-value = 2e-20 (G. max)
CNT0028514, E-value = 4e-65 (O. sativa)
CNT0035799, E-value = 5e-21 (C. reinhardtii)

Expression of CNT0009867

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MQTHNHHNGQQTQPDNTTTNNRQLKNHHGDGGQGAEWTPSGYCSRQGCVHLQAAYQQRSTSAGLVFTKICIPPLSLSTK*

>peptide 2 (31 aa)
MVSELSTSRVMVFPVRVLTKICIPPRRRRTR*

>peptide 3 (40 aa)
MVSELSTSKVMVFPVRVLTKICIPPRRRRTRWRVDSFWML*

>peptide 4 (113 aa)
MGNRHSQTTRQPTTGNLKTTTETEDKVQSGLLLDIVVGKGASIFKLLTSKDQPLLVWSSQRSAFLPSASAPSEGWTPSECCSPQGCGHPQAVYQRRSTSA
GLGEYPPCLGSWP*

>peptide 5 (53 aa)
MPSLSWILALTLSMVSELSTSRVIVLPVRVLTKICIPPRRRSTKWRVDSFWML*

>peptide 6 (40 aa)
MVSELSTSKVMVFPVRVLTKICIPPRRRRTKCRVDSFWML*

Sequence

>CNT0009867
CTTGGGTATGAGTTAAATAAATACCATTCGAATCATCAAACAGAAGATGGATCGAAGGCTTTTAGTATATTATAGTAATTGCAAAGTGGTGTAATAGACG
GAGGCAAAAGCAAAAACAAATACTCAAACTGCGATCAGAAAAGAAACCAGAAATTGGATGTTCATAAAGACGCCATTATTATTCACAAATGAGAAACAGA
AAGGAACAGAAAGCGAAAACACATTGATGATCCTTTAAGACCATAATGCAAACACATAACCACCACAATGGGCAACAGACACAGCCAGACAACACGACAA
CCAACAACAGGCAACTTAAAAACCACCACGGAGACGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCGGCAAGGGTGCGTCCATCTTCA
AGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGTCTTCACAAAGATCTGCATTCCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTGGACTCCTTC
TGAATGTTGTAGTCCGCAAGGGTGCGGCCATCCTCAAGCTGTTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCT
TGGCCTTAACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAGGGTGATGGTCTTCCCGGTAAGGGTCTTAACAAAAATCTGCATACCACCACGGAGACG
GAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCATCCTCCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCT
GGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTGTCGGAGCTTTCAACCTCCAAAGTGATGGTCTTCCCGGTGAGGGTCTTAA
CAAAAATCTGCATACCACCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCGTCCTCCAATTGCTT
ACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCCCTCCTTATCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCCACCTCCAAA
GTGATGGTCTTTCCGGTAAGAGTCTTAACGAAGATCTGCATACCACCACGGAGACGGAGGACCAAATGTAGGGTAGACTCCTTCTGGATGTTGTAGTCAG
CTAGGGTGCGGCCATCTTCCAACTGTTTCCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGATCTTAGCCTTAACATTGTC
AATGGTGTCTGAGCTTTCGACCTCAAGGGTAATCGTCTTACCCGTAAGAGTCTTAACGAAGATCTGCATACCACCACGTAGACGGAGCACCAAATGGAGG
GTAGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGTCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGGGGAATTCCTTCCT
TATCCTGAATCTTAGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACCTCTAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATCTG
CAAATTCATAAAAACAACAATC

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PGSC0003DMT400057275 Polyubiquitin protein coding CNT0009867 628 368 UTR3 Trans
PGSC0003DMT400057276 Polyubiquitin protein coding CNT0009867 628 368 UTR3 Trans