Detailed information on CNT0000014 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0025688, E-value = 2e-15 (O. sativa)

Expression of CNT0000014

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MVVYTYELNDATYFIRHDRVVPTLTPTAPMNPAKKPEEMTYPWKSPPSPHFSFFWR*

>peptide 2 (30 aa)
MKECELKKTLEYRAFVRYLYSLLHRAPCIQ*

Sequence

>CNT0000014
TGGAGGTAGGCCCAGCCCAAGCTTGTGCGGTTAAGGTTGTTGTACACGACCTCATCAAAAAAGAATGAAAAAAAACGACTAAACTAGTAGTGGAGTTCTC
ATCCAGGCTTTTAGTAGCGTAACTAACGGAATGAAACCGAAAGTGCCCATCTACCGAAGGAGAGAACCTTGTTTGGTATGAAAGAATGCGAGTTGAAGAA
AACCCTTGAGTATAGGGCTTTTGTACGATACCTATACAGTTTGTTACACCGAGCCCCATGCATCCAATGAGGAGAGTGTTGGGACATACCTATGGTCGTG
TACACCTATGAATTGAATGATGCGACCTACTTCATTCGGCATGACAGGGTAGTCCCGACGCTAACTCCGACAGCTCCAATGAACCCTGCTAAAAAACCGG
AAGAAATGACATATCCTTGGAAGAGCCCACCATCTCCTCATTTCTCTTTTTTTTGGAGATAGCGATAGATCAAAAACAAACCATAGAGCCTGTTTTTGTA
CCAAATTAGTCGTTTCCAGAACTCAC

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA12G24981.1 Uncharacterized protein protein coding CNT0000014 862 303 CDS Trans