Detailed information on CNT0000032 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000032

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)6.2026.2947.10407.2195.795.8992.7260.4470.8570.8550.5090.2200leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.58

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVCTIQVVVAYMSYKGVISIQKFISQYVKLTMRQRKQ*

>peptide 2 (56 aa)
MIKDYCPICTKYIIFYHIRAKHTLSRPRIAKTVDYFFFTKTMNFKFMLQNYLCCIM*

>peptide 3 (36 aa)
MHEKKIIWVFFFFFYLFPFFLFSFFIFHFFCYLLFLL

>peptide 4 (54 aa)
MEKVKQQMAEDTIMETGNTNSSFYQHNMSSLNILARISTNLSSTIMRSLGLCIC*

>peptide 5 (34 aa)
GYIQFDFVIHPFIKNYKKMTQMLFFTRFLLSSFF*

>peptide 6 (32 aa)
MSVLRRCQRNRRSVAKGDAEKREKGGACMRRR*

>peptide 7 (38 aa)
MYHPSCGGIYVLQRSHFHTKIYLSICQTNNEAKKTMIK*

>peptide 8 (38 aa)
MKTTYVHFQGSIVFAYLQRVVSKALRECTYTYKMNCIS*

>peptide 9 (35 aa)
MIKNKRFSTFYHSTSKNYNDHVEMRDFSKKKKRKK*

Sequence

>CNT0000032
TGGTTACATTCAATTTGATTTCGTTATTCATCCATTCATTAAAAACTATAAAAAAATGACCCAAATGCTTTTTTTCACCCGGTTCCTTCTCTCTAGTTTC
TTCTAATATGAATCTTTAGAACAAGCCATCAAATAAATGTCAGTTATATAAAAGTGGAAAAGATCATATGAAAAGTTCAATGACAAAGTCTCTATCTATA
AGTCATCCAATTCACAAAAGTATATGCTGAGAATTCCTCGTGTGTTGGACCGTGCATTACTATAAGATAACTCATATTCAATTTGTTTTTTTTCCCTGAA
AATATTACATAGAATTAATGCGTGAATTCAGACATAAAGACCAAGTAATGTAACAAGTAAAACACACTCAAACTTGTTAAAAGTTTAGAATAGCATAAAA
CTCATGCAGATCCTAAATGAATGATAAAAGATTATTGTCCAATTTGCACAAAATACATCATCTTTTATCATATCAGAGCAAAACACACCCTTAGTAGACC
AAGAATAGCCAAAACTGTTGATTACTTTTTTTTTACCAAAACAATGAACTTCAAATTCATGCTACAAAACTACTTATGCTGCATTATGTGAATGAAAACT
ACATATGTTCACTTTCAAGGTAGCATTGTATTTGCATATCTCCAAAGAGTTGTCTCCAAGGCATTGAGGGAGTGTACCTACACATACAAAATGAATTGTA
TATCATAGACATATAAACTCAATGGAGAAAGTTAAGCAACAAATGGCAGAAGACACCATCATGGAAACAGGCAACACAAATTCCAGTTTCTATCAACACA
ATATGAGCTCATTGAACATTTTAGCTCGAATCAGTACCAATTTATCATCCACTATAATGAGAAGTTTAGGTCTCTGTATATGCTGATCAGATTTTAAGAA
AAAAAAATCCCTAGTTTTACTATCAACAGTCTATGGTATGTACCATCCAAGTTGTGGTGGCATATATGTCCTACAAAGGAGTCATTTCCATACAAAAATT
TATCTCTCAATATGTCAAACTAACAATGAGGCAAAGAAAACAATGATTAAATAGAGAAATCTATCACAATGATAAAGAACAAACGATTTTCCACCTTCTA
CCATTCAACAAGCAAAAATTATAACGATCATGTAGAGATGCGAGATTTCTCAAAAAAAAAGAAAAGAAAGAAATAGGATGCAAGTATATGACGAAATAGG
ATGCAACATATAAATATAACCGAGAAGTAGATAAAATAAACAGTGGTTCAGCTTCAAGCTAGTGTGGAGGAGAAGTTATCGAGCAGCGGGTCGAAGAGAG
AAGAATACACAACCAACGACAAGTGCAAAACAACCACCTCCGGTCTCGTTGTAAATCACCTCGACATTGGTGCTAAGGAGATGTCAACGAAATGGGAGAT
GCAAGAAAAACAGGGGCCTCGTCGTAAATCACATTGATGTCAGTGCTAAGGAGATGCCAGAGAAATAGGAGAAGCGTGGCAAAAGGGGATGCCGAGAAAC
GAGAGAAGGGGGGAGCATGCATGAGAAGAAGATAATTTGGGTTTTTTTTTTTTTTTTTTATCTTTTTCCCTTTTTCCTCTTCTCATTTTTTATATTTCAT
TTTTTTTGTTATTTACTTTTTCTTTTATT

lncRNA-RNA interactions

Number of interactions: 15

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA0048S00305.1 Uncharacterized protein protein coding CNT0000032 2242 850 UTR3 Cis
GLYMA09G08586.1 Uncharacterized protein protein coding CNT0000032 127 104 CDS Trans
GLYMA13G17490.1 Uncharacterized protein protein coding CNT0000032 336 222 CDS Trans
GLYMA13G17490.1 Uncharacterized protein protein coding CNT0000032 705 532 CDS_UTR Trans
GLYMA13G17490.2 Uncharacterized protein protein coding CNT0000032 336 222 CDS Trans
GLYMA13G17490.2 Uncharacterized protein protein coding CNT0000032 705 532 CDS_UTR Trans
GLYMA13G17490.3 Uncharacterized protein protein coding CNT0000032 336 222 CDS Trans
GLYMA13G17490.3 Uncharacterized protein protein coding CNT0000032 705 532 CDS_UTR Trans
GLYMA15G20210.1 Uncharacterized protein protein coding CNT0000032 118 104 CDS Trans
GLYMA15G23215.1 Uncharacterized protein protein coding CNT0000032 1018 574 CDS_UTR Trans
GLYMA15G23215.1 Uncharacterized protein protein coding CNT0000032 308 318 CDS Trans
GLYMA17G05020.1 Uncharacterized protein protein coding CNT0000032 395 222 CDS Trans
GLYMA17G05020.1 Uncharacterized protein protein coding CNT0000032 738 523 CDS_UTR Trans
GLYMA17G05020.2 Uncharacterized protein protein coding CNT0000032 395 222 CDS Trans
GLYMA17G05020.2 Uncharacterized protein protein coding CNT0000032 738 523 CDS_UTR Trans