Detailed information on CNT0000038 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000038

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MPPSLRYSRYLANSDLAVVFFFHRRAKKLRSG*

>peptide 2 (57 aa)
RNHIEFIKYTNSTMQFLFTGLLEFKSHMHASFLEILKIPCKFRPCCCFLFPSKSQEA*

Sequence

>CNT0000038
AGAAATCATATAGAATTTATAAAATACACTAACTCCACAATGCAATTCCTCTTTACAGGTTTATTGGAATTCAAATCCCACATGCATGCCTCCTTCCTTG
AGATACTCAAGATACCTTGCAAATTCAGACCTTGCTGTTGTTTTCTTTTTCCATCGAAGAGCCAAGAAGCTTAGAAGTGGGTGACTCTTCTTATCCCTAT
TATTATCACTGACCTTCTTTGTGGGGTTTCTCTTTTGATTGATGTCCCCATAGTTGGAATCCAGAGCCATTTTTCTTGAAGAATTGGATCCATGAGAAGG
CAAACTAGTGCTCCTCTTGAACCCCTCATGCTAAAGTGCAGTAGTGGCAGATTCTTTACCTAATATTTCATACCCCCTCCAAGTAGTCATTGATCTAAAG
GTTGGATCTTGTTGTGTGTGAAAGACAAGATTTTGAATCTTTGTTGATATATTGAGTGTAATTAAAGAGGTGGAGGAAAAGGGTTGCTGGGGATTATAGA
TGAGATAAATTGGAGGATAGCACAACATAGTGTGGGGCTTTAGATATGCATCTTTGGGGTCAAGTTTGGTTATGTAGTAGACTTTGGTCCTTCATGTGTT
TCTCAATTATTTACTAATAATGGTTACTGCACCGTGTGATTTGGAACCATTCAGTTTTTGCAACTTTTGTTGACTATTTCTATTCTGCCGTACCCACA

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA16G24900.1 Uncharacterized protein protein coding CNT0000038 460 321 CDS Trans