Detailed information on CNT0000042 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0014299, E-value = 5e-07 (S. tuberosum)

Expression of CNT0000042

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)12.03415.80117.76146.8919.1817.3385.3335.57813.93113.19717.33914.86613.54248.62130.577leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)02.557.51012.51517.52022.52527.53032.53537.54042.54547.5505…52.5

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MIQSKLLLMCCFYIQNLQWHALDVRLVHVI*

>peptide 2 (29 aa)
MQHLLMQWVSHPAQEQQDLIEQTVFVHSS*

>peptide 3 (66 aa)
MDCDHVFGWGCGIVGVCVLVKALFSCILSYYDAMQAELCFQLPSMQWLTDWYLLYQSVSHFILNLL*

>peptide 4 (32 aa)
MMLCRQNYVSNYHLCNGSQIGICYTSQSVISF*

>peptide 5 (38 aa)
MFPITIYAMAHRLVFVIPVSQSFHFKFVVVWFKFGSFQ*

>peptide 6 (50 aa)
MKESGFENNDTKQAAADVLFLYSKFAMACIGCKARPCDLRFHLMKVCPLL*

>peptide 7 (39 aa)
MPSSLNRESPQNAASPDAMGESSSTGTARLDRTDSFRAL*

Sequence

>CNT0000042
GGCTTGTCTAGGTCTTCAATCGAACTCGCCAGGAACGGAACTTTCTCAGATTGACACACACCATGAAGGAAAGTGGTTTCGAGAATAATGATACAAAGCA
AGCTGCTGCTGATGTGTTGTTTCTATATTCAAAATTTGCAATGGCATGCATTGGATGTAAGGCTCGTCCATGTGATTTGAGGTTTCATTTGATGAAGGTA
TGCCCTCTTCTCTAAATAGGGAGTCACCACAGAATGCAGCATCTCCTGATGCAATGGGTGAGTCATCCAGCACAGGAACAGCAAGACTTGATAGAACAGA
CAGTTTTCGTGCACTCTAGTTGAGAATGGACTGTGACCATGTTTTTGGTTGGGGCTGTGGCATAGTAGGTGTTTGTGTCTTGGTAAAAGCACTTTTTTCC
TGCATATTATCATATTATGATGCTATGCAGGCAGAATTATGTTTCCAATTACCATCTATGCAATGGCTCACAGATTGGTATTTGTTATACCAGTCAGTCA
GTCATTTCATTTTAAATTTGTTGTAGTGTGGTTCAAATTTGGTTCGTTTCAGTAAGTAAATGTTGCTCTTAATCCTTCTACCTGGCTCGAGTATAATTAC
CTCTCATAAAGGATGTATGTAGTATTGTAGTCTTGTACCAAAAAAAAATCAGTAAATAAATGCATGTGTTCAATGTTTT