Detailed information on CNT0000044 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q943Z6|SRP19_ARATH, E-value = 1e-42

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000044

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)10.25612.22710.09123.0696.4277.3719.346.69712.62914.23116.4812.54611.77612.86227.625leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)024681012141618202224262830

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MGGLTGPTSIEDSLLLLLLLHSSFFPFRCAPS*

>peptide 2 (36 aa)
MDCDVSRLHKLQENDGRRKAHWPRQSLRKSYLRRNR*

>peptide 3 (109 aa)
MDTSELPNLKKWIVMYPVYINSKKTMAEGRRIGLAKACENPTCAEIGDCCSYLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLFNSAISSNQDGLDC
YLDHSTLHKR

Sequence

>CNT0000044
GCCCAGATGAAGCATGGGTGGGTTGACTGGGCCAACCAGCATTGAAGACTCTCTTCTTCTTCTCCTTCTTCTTCATTCCTCCTTCTTTCCGTTTCGGTGT
GCGCCATCGTAGAAGTGAAGATTCAGTTTGGGATTTTTCGATTCGCTCTCAATTTGCAGTGCGTGAGTGAAGCACATGGATACTTCCGAATTGCCCAACC
TAAAGAAATGGATTGTGATGTATCCCGTTTACATAAACTCCAAGAAAACGATGGCCGAAGGAAGGCGCATTGGCCTCGCCAAAGCCTGCGAAAATCCTAC
TTGCGCCGAAATCGGTGATTGCTGCAGCTATCTGAAGCTCCCTTTTGCAATTGAGATAGACAAGGCGTACCCTCGTGATTTCATGCAGAGAGGGCGCGTG
AGGGTGTTGCTTAAGAAGGAGGATGGGACTCTCTTTAATTCCGCCATCTCATCAAATCAAGATGGATTGGATTGCTACCTGGACCATTCAACCCTCCACA
AAAGGAG