Detailed information on CNT0000045 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs: nothing found

Expression of CNT0000045

Peptides detected in this lncRNA

>peptide 1 (30 aa)
SGFRRRLASLEHLQHLPPICPCSVSHVQCQ*

Sequence

>CNT0000045
TCTGGATTTCGTCGAAGGTTAGCCTCTTTGGAACACCTTCAGCACTTGCCCCCTATATGTCCTTGCTCAGTTAGTCATGTACAATGCCAATAGTAATTAA
AAGTGAGTACAAAACTTAGATACACTTTAATAGGTGTTTTTGGGTGTTTTCTTTTCAGAATTAGAGTTTTGCCTCAATAATCCGCATAATAAAGAACAAC
ATCACTCATCAGTCATTAACATCTCTTCTAAAATACCCATTTTAGCCCATTATTTATTTTCACGTACTGTTTATTAGGACTCGCAAAAATTGCATCAAGA
CTCGTTAAATATATGATCTGGTAAGTTCTTATAAATTTCAG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA16G25860.1 Uncharacterized protein protein coding CNT0000045 818 302 CDS Cis